Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,987,850 – 7,987,946 |
Length | 96 |
Max. P | 0.695280 |
Location | 7,987,850 – 7,987,946 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.40 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -22.84 |
Energy contribution | -24.87 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.03 |
Mean z-score | -2.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7987850 96 + 27905053 --GUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCAACAAAAAAAGGAAAAC --((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))......................... ( -24.50) >DroSec_CAF1 54027 98 + 1 GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCCAAUUCUGCCCAUAUACAAGCCCAACAAAAAAAGGGAAAC ((((((((((((.((((((.((......)).))))))..........((((.....))))...))))))))))))...(((..........))).... ( -30.20) >DroSim_CAF1 54290 97 + 1 GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCCAAUUCUGCCCAUAUACAAGCCCAACAAA-AAAGGGAAAC ((((((((((((.((((((.((......)).))))))..........((((.....))))...))))))))))))...(((......-...))).... ( -30.30) >DroEre_CAF1 56545 94 + 1 GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCA----AAAAAGGGAAAC ((((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))))...(((.----.....))).... ( -33.20) >DroYak_CAF1 56779 94 + 1 GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCA----AAAAAGGGAAAC ((((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))))...(((.----.....))).... ( -33.20) >DroAna_CAF1 60986 95 + 1 GUGUGUGAGCAGCCUAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGAUCUCUUGGAUUCAAC---UACCCUCGCCCACCCAGUCGAGGGUAAC ((((.(((.((..(((......)))..)).....))).)))).......(((((.....)))))...---((((((((.(......).)))))))).. ( -22.00) >consensus GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCAACAAAAAAAGGGAAAC ((((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))))...(((..........))).... (-22.84 = -24.87 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:23 2006