Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,967,768 – 7,967,863 |
Length | 95 |
Max. P | 0.500000 |
Location | 7,967,768 – 7,967,863 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -29.63 |
Consensus MFE | -19.61 |
Energy contribution | -21.20 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.08 |
Mean z-score | -1.15 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7967768 95 - 27905053 ------------------CCUCGUCGGACGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA ------------------((.....)).(((((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))--)))... ( -29.70) >DroSec_CAF1 33921 113 - 1 CCUCGUCUUUAUCCUCGUCCUCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCAGGCUACUUAAAGGCACUUCAGCAG--AUGACA ....(((....(((.((....))..))).((((((....((((((...........((((((((.....((((....))))))))))))....))))))....))))--))))). ( -34.86) >DroSim_CAF1 34290 95 - 1 ------------------CCUCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA ------------------((((....))))(((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))--)..... ( -29.80) >DroEre_CAF1 36243 105 - 1 --UCAUCCUCAUCC------UCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA --......(((((.------..((.((((((((..((..((((..(((.((((....))))..)))(((((......))))))))).))....)))).)))).)).)--)))).. ( -30.40) >DroYak_CAF1 34942 113 - 1 UCUCGUCCUCAUCCUGGUCGUCGGAGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUCGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA ....((((((.(((........))).)))((((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))--))))). ( -36.50) >DroAna_CAF1 42154 78 - 1 -------------------------------------CUGUGUUUGCCAGCUAUUUGUAGCCUGUCGUUUUCCGUUUGAAGCACGCUACUUAAAGCCACUUCACCGGCACUGACA -------------------------------------...((((((((.((((....))))...............(((((...(((......)))..)))))..))))..)))) ( -16.50) >consensus __________________CCUCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG__AUGACA ......................((((.....((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))...)))). (-19.61 = -21.20 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:22 2006