Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,964,492 – 7,964,583 |
Length | 91 |
Max. P | 0.752298 |
Location | 7,964,492 – 7,964,583 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -16.38 |
Consensus MFE | -15.41 |
Energy contribution | -15.60 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.39 |
Structure conservation index | 0.94 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7964492 91 + 27905053 AAAGUAGCAAACAGAUUAGGUUUUUAAUGGUAUUCAAACUGAUUUGAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU ....................((((((((((.(((((((.(((((.........))))).)))))))))))))))))............... ( -18.00) >DroSec_CAF1 30725 90 + 1 AAAGUAGCAUGCAGAUUUAGUUUUUAAUGGUAUUUAAACUGAUUUCAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAU-U ..(((((.(((.(((((...((((((((((.(((((((.(((((.(.....).))))).))))))))))))))))))))))))).))))-) ( -17.00) >DroSim_CAF1 31066 91 + 1 AAAGUAGCAUGCAGAUUUAGUUUUUAAUGGUAUUUAAACUGAUUUCAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU .((((((.(((.(((((...((((((((((.(((((((.(((((.(.....).))))).))))))))))))))))))))))))).)))))) ( -17.90) >DroEre_CAF1 33066 74 + 1 GAAG-----------------GUUUAAUGGUAUGUAAGCUGAUUUCAGAAAGUAAUCGACUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU ....-----------------.((((((((....((((.(((((.(.....).))))).))))...))))))))................. ( -12.60) >consensus AAAGUAGCAUGCAGAUUUAGUUUUUAAUGGUAUUUAAACUGAUUUCAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU ....................((((((((((.(((((((.(((((.........))))).)))))))))))))))))............... (-15.41 = -15.60 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:21 2006