Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,963,193 – 7,963,284 |
Length | 91 |
Max. P | 0.560430 |
Location | 7,963,193 – 7,963,284 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -19.45 |
Consensus MFE | -16.94 |
Energy contribution | -16.86 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7963193 91 + 27905053 AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUUAAAACGACAAACGCAGAAUUCCGCCCGUAAAAGGGUGGCGAACGUGGUCGGCAGCAA ............((((.((((((.(((.....)))...))))...(((......((((((......)))))).....))))).)))).... ( -20.70) >DroSec_CAF1 29417 91 + 1 AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUUAAAACGACAAACGCAGAAUGCCGCCCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA ............((((.((((((.(((.....)))...))))...(((....((((((((......))))))))...))))).)))).... ( -25.20) >DroSim_CAF1 29750 91 + 1 AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUUAAAACGACAAACGCAGAAUACCGCCCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA ............((((.((((((.(((.....)))...))))...(((......((((((......)))))).....))))).)))).... ( -20.70) >DroEre_CAF1 31791 90 + 1 AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAACGCAGAAUUCCACUUGAA-AAGGGUGGCGAACGUGGUCGGCAGCAA ............((((...(((..(((....)))..)))(((..(((.......((((((...-..))))))....))).))))))).... ( -15.60) >DroYak_CAF1 30310 91 + 1 AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAACGCAGAAUUCCACUCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA ............((((...(((..(((....)))..)))(((..(((.......((((((......))))))....))).))))))).... ( -18.20) >DroAna_CAF1 37509 85 + 1 AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAAAGCAGAAUUCCAUCCGAAAACGGGUGGCAAACGUGGCCGG------ .............((((.((((..(((....)))..))))..............(((((((....)))))))......))))...------ ( -16.30) >consensus AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAACGCAGAAUUCCACCCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA ............((((.((((((...............))))...(((......((((((......)))))).....))))).)))).... (-16.94 = -16.86 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:20 2006