Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,958,954 – 7,959,051 |
Length | 97 |
Max. P | 0.594896 |
Location | 7,958,954 – 7,959,051 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -16.73 |
Energy contribution | -17.07 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.18 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7958954 97 - 27905053 CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACUGCUGCCAAAAAGUGCACAGUAAGUUAAUUUGGCC--------AAG-AA (..((((((((((((((....))))))((((((...)))))))))).........((((.((((.....).)))))))..........))))--------..)-.. ( -26.60) >DroPse_CAF1 36045 75 - 1 CGUCGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAGAAGGUACCC------------------------------- ((((((.....((((((....))))))))))))..(((((.((((((.(.........).))))))..)))))..------------------------------- ( -22.60) >DroSec_CAF1 25290 92 - 1 CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUAAGUUAAUUUGGAU-------------- ...(((((...((((((....))))))..((((((((.......))))))))....))))).(((((....((.......))...)))))..-------------- ( -20.70) >DroEre_CAF1 26400 97 - 1 CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUAAGAUAAUUUGGCC--------UAG-AA ..(((((((((((((((....))))))((((((...))))))))))(((.((((....(((.......))).....))))))).....))))--------)..-.. ( -24.10) >DroYak_CAF1 25977 106 - 1 CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUACGAUAAUUUCGAGAUCAUUUUAAGAAA (((.....)))((((((...(((((((((((((...))))))(((((.(.........).))))).)))))))......(((.....)))....))))))...... ( -24.80) >DroPer_CAF1 32949 75 - 1 CGUCGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAGAAGGUACCC------------------------------- ((((((.....((((((....))))))))))))..(((((.((((((.(.........).))))))..)))))..------------------------------- ( -22.60) >consensus CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUAAG_UAAUUUGG________________ ...(((.((.(((((((....))))))..((((((((.......))))))))....).)).))).......................................... (-16.73 = -17.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:19 2006