Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,945,895 – 7,945,992 |
Length | 97 |
Max. P | 0.713580 |
Location | 7,945,895 – 7,945,992 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.87 |
Mean single sequence MFE | -40.01 |
Consensus MFE | -34.61 |
Energy contribution | -34.98 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.04 |
Mean z-score | -1.55 |
Structure conservation index | 0.87 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7945895 97 - 27905053 UAUCUGCAGGAGCUGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGCA------------ ..(((((((...))))).))((((((((...(((((((((.((((...............)))).)))))))))...))))))))............------------ ( -39.76) >DroSec_CAF1 12268 109 - 1 UAUCUGCAGGAGCCGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGGAAAGGGGAAACGG ..(((.(((..(.((.....((((((((...(((((((((.((((...............)))).)))))))))...)))))))))).)..))))))....(....).. ( -40.26) >DroSim_CAF1 12383 109 - 1 UAUCUGCAGGAGCCGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGCAACGGGCAGCCGG ...((((.(..((((..((.((((((((...(((((((((.((((...............)))).)))))))))...))))))))...))..))))..)..)))).... ( -45.86) >DroYak_CAF1 12896 102 - 1 UAUCUGCAGGAGCAGCAGGAGCAGCAUGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUCGCAGCCGACAACUGGUAACUGG------- ...((((....))))(((..((.((....))(((((((((.((((...............)))).)))))))))......)).((((.....))))..))).------- ( -34.16) >consensus UAUCUGCAGGAGCCGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGCAACGGG_______ ....((((((.((.((....)).))....(.(((((((((.((((...............)))).))))))))))..))))))((((.....))))............. (-34.61 = -34.98 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006