Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,932,152 – 7,932,267 |
Length | 115 |
Max. P | 0.528538 |
Location | 7,932,152 – 7,932,267 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 92.44 |
Mean single sequence MFE | -19.38 |
Consensus MFE | -13.33 |
Energy contribution | -14.00 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.07 |
Structure conservation index | 0.69 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7932152 115 + 27905053 AAAAGUAAAAAAAAAAAUUAAAAGCUAAAAGGAAACAGAGAGCCAAAUGAAAUAAAAGCCACCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG .......................(((((..(....).....(((.............(((......)))(....).......)))..................)))))....... ( -19.80) >DroSec_CAF1 63642 114 + 1 AAAAGUAAAA-AAAAAAUUAAAAGCUAAAAGGAAACAGAGAGCCAAAUGAAAUAAAAGCCACCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG ..........-............(((((..(....).....(((.............(((......)))(....).......)))..................)))))....... ( -19.80) >DroEre_CAF1 64631 107 + 1 AAAA--------AAAAAUUAAAAGCUAAGAGGAAACUGAGAACCAAAUGAAAUAAAAACCGCCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG ....--------...........(((((..((((.(((((((.....((........((((((...)))))).........)).....)))))).).))))..)))))....... ( -18.53) >consensus AAAAGUAAAA_AAAAAAUUAAAAGCUAAAAGGAAACAGAGAGCCAAAUGAAAUAAAAGCCACCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG .......................(((((..(....).....(((.((((..((....(((......))).))..))))....)))..................)))))....... (-13.33 = -14.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006