Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,931,797 – 7,931,912 |
Length | 115 |
Max. P | 0.772958 |
Location | 7,931,797 – 7,931,912 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -30.51 |
Consensus MFE | -17.50 |
Energy contribution | -19.75 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -3.04 |
Structure conservation index | 0.57 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7931797 115 + 27905053 ----ACAAAUAAAAGCAAAUUAAAUGCAGGACUCUGCAAAUGUUAAAUAUUUACAUAAGCACUUUUUGCAACUUGGUUGCAUUUUAUUUGAUUAACCAGGGCCACUUGGU-ACCUGGCGC ----.(((((((((((((......(((((((...(((..((((.........))))..)))..)))))))......)))).))))))))).....((((((((....)))-.)))))... ( -33.30) >DroSim_CAF1 65448 116 + 1 ----ACAAAUAAAAGCAAAUUAAAUGCAGGACAUUGCAAAUGGUAAAUAUUUGCAUAAGCACUUUUUGCAACUUGGUUGCAUUUUAUUUGAUUAACCAGAGCCACUUGGUUAGCUGGCGC ----.(((((((((((((......(((((((...((((((((.....))))))))........)))))))......)))).))))))))).....((((.(((....)))...))))... ( -31.40) >DroEre_CAF1 64298 115 + 1 ----GCAAAUAAAAGCAAAUUUAAUGCAGUACUCCACAAAUGUUGCAUGUUUACACUAACACUUUUUGCAACUCGGCUGCAUUUUAUUUGAUUAAACAUAGCCACUUGGU-GCCAGGCGC ----((.........(((((..((((((((...........((((((((((......)))).....))))))...))))))))..)))))..........(((...((..-..))))))) ( -26.04) >DroYak_CAF1 65712 119 + 1 AAAUACAAAUAAAAGCAAAUUUAAUGCAGGACUCUGCAAAUGUUGUAUAUUUACAUAAACACUUUUUGCCACUUGGUUGCAUUUUAUUUGAUUAAACGCAGCCACUUGGU-GGCAGGCGC ..............((........(((((....)))))..(((((((....))))...)))....(((((((((((((((..((((......)))).)))))))...)))-))))))).. ( -31.30) >consensus ____ACAAAUAAAAGCAAAUUAAAUGCAGGACUCUGCAAAUGUUAAAUAUUUACAUAAACACUUUUUGCAACUUGGUUGCAUUUUAUUUGAUUAAACAGAGCCACUUGGU_ACCAGGCGC .....(((((((((((((......(((((((...(((..((((.........))))..)))..)))))))......)))).)))))))))..........(((............))).. (-17.50 = -19.75 + 2.25)
Location | 7,931,797 – 7,931,912 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -18.95 |
Energy contribution | -18.45 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.05 |
Structure conservation index | 0.67 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7931797 115 - 27905053 GCGCCAGGU-ACCAAGUGGCCCUGGUUAAUCAAAUAAAAUGCAACCAAGUUGCAAAAAGUGCUUAUGUAAAUAUUUAACAUUUGCAGAGUCCUGCAUUUAAUUUGCUUUUAUUUGU---- ..((((((.-.((....)).))))))....(((((((((((((((...))))))...((..(((.(((((((.......))))))))))..))(((.......)))))))))))).---- ( -30.20) >DroSim_CAF1 65448 116 - 1 GCGCCAGCUAACCAAGUGGCUCUGGUUAAUCAAAUAAAAUGCAACCAAGUUGCAAAAAGUGCUUAUGCAAAUAUUUACCAUUUGCAAUGUCCUGCAUUUAAUUUGCUUUUAUUUGU---- ..(((((....((....))..)))))....(((((.(((((((.....((((((((..(((..(((....)))..)))..))))))))....))))))).)))))...........---- ( -27.30) >DroEre_CAF1 64298 115 - 1 GCGCCUGGC-ACCAAGUGGCUAUGUUUAAUCAAAUAAAAUGCAGCCGAGUUGCAAAAAGUGUUAGUGUAAACAUGCAACAUUUGUGGAGUACUGCAUUAAAUUUGCUUUUAUUUGC---- .(((.((..-..)).)))((...((..((.(((((..(((((((.....(..(((...(((((.(((....)))..))))))))..)....)))))))..))))).))..))..))---- ( -24.00) >DroYak_CAF1 65712 119 - 1 GCGCCUGCC-ACCAAGUGGCUGCGUUUAAUCAAAUAAAAUGCAACCAAGUGGCAAAAAGUGUUUAUGUAAAUAUACAACAUUUGCAGAGUCCUGCAUUAAAUUUGCUUUUAUUUGUAUUU ((((..(((-((...))))).))))...........((((((((......(((((((((((((((((....)))).)))))))((((....))))......)))))).....)))))))) ( -31.70) >consensus GCGCCAGCC_ACCAAGUGGCUCUGGUUAAUCAAAUAAAAUGCAACCAAGUUGCAAAAAGUGCUUAUGUAAAUAUUCAACAUUUGCAGAGUCCUGCAUUAAAUUUGCUUUUAUUUGU____ ..(((............)))..........(((((((((.((((......((((.....(((..((((.........))))..)))......))))......)))))))))))))..... (-18.95 = -18.45 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:12 2006