Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,930,398 – 7,930,597 |
Length | 199 |
Max. P | 0.984653 |
Location | 7,930,398 – 7,930,518 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -22.50 |
Energy contribution | -22.22 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.73 |
Structure conservation index | 0.95 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7930398 120 + 27905053 CCCCCUUACAAGGACUUACAAAUACCCAAUGCACCACAAAAAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGG ..((((((.(((((....................(((((((............)))))))((((......)))).))))))))))).........((((((((.........)))))))) ( -24.30) >DroSec_CAF1 61979 120 + 1 CCCCCUUACAAGGACUUACAAAUACCCAAUGCACCACAAAAAUAAAUUCUCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGG ..((((((.(((((....................(((((((............)))))))((((......)))).))))))))))).........((((((((.........)))))))) ( -24.30) >DroSim_CAF1 63815 120 + 1 CCCCCUUACAAGGACUUACAAAUACCCAAUGCACCACAAAAAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGG ..((((((.(((((....................(((((((............)))))))((((......)))).))))))))))).........((((((((.........)))))))) ( -24.30) >DroEre_CAF1 62889 120 + 1 CCUUCUUACAAGGACUUACCAAUACCCAAUGCACCACAAAAAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGG ((((.....)))).................................(((((((......(((((......)))))......))))))).......((((((((.........)))))))) ( -22.70) >DroYak_CAF1 64266 120 + 1 CUCCUCUACAAGGACUUACAAAUACCCAAUGCACCACAAAAAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGG .((((.....))))................................(((((((......(((((......)))))......))))))).......((((((((.........)))))))) ( -23.30) >consensus CCCCCUUACAAGGACUUACAAAUACCCAAUGCACCACAAAAAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGG ..((((((.(((((....................(((((((............)))))))((((......)))).))))))))))).........((((((((.........)))))))) (-22.50 = -22.22 + -0.28)
Location | 7,930,438 – 7,930,558 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -28.02 |
Energy contribution | -27.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.65 |
Structure conservation index | 0.99 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7930438 120 + 27905053 AAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGGUUUUAAUUGAAAAUGCAAACUCUGCCUUGAGCAAGCAGUG ......(((((((......(((((......)))))......)))))))...((((((((((((.........)))))))))))).........(((...(((......)))...)))... ( -30.90) >DroSec_CAF1 62019 120 + 1 AAUAAAUUCUCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGGUUUUAAUUGAAAAUGCAAACUCUGCCUUGAGCAACCCGUG ......(((((((......(((((......)))))......)))))))...((((((((((((.........))))))))))))..(((..((.(((.....))).))...)))...... ( -25.40) >DroSim_CAF1 63855 120 + 1 AAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGGUUUUAAUUGAAAAUGCAAACUCUGCCUUGAGCAACCCGUG ......(((((((......(((((......)))))......)))))))...((((((((((((.........))))))))))))..(((..((.(((.....))).))...)))...... ( -28.40) >DroEre_CAF1 62929 120 + 1 AAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGGUUUUAAUUGAAAAUGCAAACUCUGCCUUGAGCAACCCGUG ......(((((((......(((((......)))))......)))))))...((((((((((((.........))))))))))))..(((..((.(((.....))).))...)))...... ( -28.40) >DroYak_CAF1 64306 120 + 1 AAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGGUUUUAAUUGAAAAUGCAAACUCUGCCUUGAGCAACCCGUG ......(((((((......(((((......)))))......)))))))...((((((((((((.........))))))))))))..(((..((.(((.....))).))...)))...... ( -28.40) >consensus AAUAAAUUCCCUCUUUUGUGUUUGACUAAGCAAAUUCCUUUGAGGGAAAUCAAAACCGAUUUGAUUGCAGGCUAAAUCGGUUUUAAUUGAAAAUGCAAACUCUGCCUUGAGCAACCCGUG ......(((((((......(((((......)))))......)))))))...((((((((((((.........))))))))))))..(((..((.(((.....))).))...)))...... (-28.02 = -27.86 + -0.16)
Location | 7,930,438 – 7,930,558 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -28.42 |
Consensus MFE | -25.64 |
Energy contribution | -26.04 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.90 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7930438 120 - 27905053 CACUGCUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCAAAGGAAUUUGCUUAGUCAAACACAAAAGAGGGAAUUUAUU ...(((..((((......))))..))).....(((((((((((((((...........)))))))))))))))((((((....(..((((......))))..)....))))))....... ( -32.20) >DroSec_CAF1 62019 120 - 1 CACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCAAAGGAAUUUGCUUAGUCAAACACAAAAGAGAGAAUUUAUU ...(((((.(((.(((((((............(((((((((((((((...........)))))))))))))))(((......))).))))))).((.....))......))))))))... ( -25.00) >DroSim_CAF1 63855 120 - 1 CACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCAAAGGAAUUUGCUUAGUCAAACACAAAAGAGGGAAUUUAUU .....((.((((......))))..))......(((((((((((((((...........)))))))))))))))((((((....(..((((......))))..)....))))))....... ( -28.30) >DroEre_CAF1 62929 120 - 1 CACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCAAAGGAAUUUGCUUAGUCAAACACAAAAGAGGGAAUUUAUU .....((.((((......))))..))......(((((((((((((((...........)))))))))))))))((((((....(..((((......))))..)....))))))....... ( -28.30) >DroYak_CAF1 64306 120 - 1 CACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCAAAGGAAUUUGCUUAGUCAAACACAAAAGAGGGAAUUUAUU .....((.((((......))))..))......(((((((((((((((...........)))))))))))))))((((((....(..((((......))))..)....))))))....... ( -28.30) >consensus CACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCAAAGGAAUUUGCUUAGUCAAACACAAAAGAGGGAAUUUAUU .....((.((((......))))..))......(((((((((((((((...........)))))))))))))))((((((....(..((((......))))..)....))))))....... (-25.64 = -26.04 + 0.40)
Location | 7,930,478 – 7,930,597 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.49 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -27.80 |
Energy contribution | -28.04 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.88 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7930478 119 - 27905053 AUGGAAUAUCCCAAAGGGUUUGGAAA-AAAGUAAAGCCGGCACUGCUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCA .(((......))).((((........-........((..((.((((((.....)))))).))..))......(((((((((((((((...........))))))))))))))).)))).. ( -33.80) >DroSec_CAF1 62059 119 - 1 AUGGAAUAUCCCAAAGGGUUUGGAAA-AAAGUAAAGCCGGCACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCA .(((......))).((((....((((-(..((((((((((((.....))))...)))....))))).)))))(((((((((((((((...........))))))))))))))).)))).. ( -30.60) >DroSim_CAF1 63895 120 - 1 AUGGAAUAUCCCAAAGGGUUUGGAAAAAAAGUAAAGCCGGCACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCA .(((......))).((((....(((((...((((((((((((.....))))...)))....))))).)))))(((((((((((((((...........))))))))))))))).)))).. ( -30.40) >DroEre_CAF1 62969 120 - 1 AUGGAAUAUCCGAAAGGGCUCGGAAAAAAAGUAAAACCGGCACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCA ..((((..(((((......))))).......(((((((((....((((((...((((.(((((.(..(((......))).).))))).))))))))))...)))))))))..)))).... ( -31.70) >DroYak_CAF1 64346 119 - 1 AUGGAAUAUCCCAAAGGGUUUGGAAA-AAAGUAAAGCCGGCACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCA .(((......))).((((....((((-(..((((((((((((.....))))...)))....))))).)))))(((((((((((((((...........))))))))))))))).)))).. ( -30.60) >consensus AUGGAAUAUCCCAAAGGGUUUGGAAA_AAAGUAAAGCCGGCACGGGUUGCUCAAGGCAGAGUUUGCAUUUUCAAUUAAAACCGAUUUAGCCUGCAAUCAAAUCGGUUUUGAUUUCCCUCA .(((......)))..(((...(((((.....(((((((((....((((((...((((.(((((.(..(((......))).).))))).))))))))))...))))))))).)))))))). (-27.80 = -28.04 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:03 2006