Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,129,388 – 1,129,494 |
Length | 106 |
Max. P | 0.936170 |
Location | 1,129,388 – 1,129,494 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 88.17 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -21.70 |
Energy contribution | -22.70 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.30 |
Structure conservation index | 0.78 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1129388 106 - 27905053 UUAAAUUAUUUUUGCGGUCUGUAAAUAAGCCGGGCAAA-------AAACUAAAUCUAAAUCGAAAUCGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGGCGAGAGCGA .(((((((((((((((((((((......((...))...-------..............(((....))).....))))))))))))....)))))))))....((....)).. ( -29.40) >DroSec_CAF1 63292 112 - 1 GUAAAUUAUGUUUGCGGUCUGUAAAUAAGCCUGGCAAA-AACCUAAAACUAAAACUAAAUCCAAAACGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGGCGAGAUCGG ((((((((((((((((((((((..........((....-..)).......................((....)))))))))))))))....)))))))))....((....)). ( -25.90) >DroSim_CAF1 63900 113 - 1 GUAAAUUAUGUUUGCGGUCUGUAAAUUUGCCUGACAAAAAAACCAAAACUAAAUCUAAAUCGAAAACGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGCCGAGAGCGG ((((((((((((((((((((((...((((.....)))).....................(((....))).....)))))))))))))....)))))))))...(((....))) ( -28.10) >consensus GUAAAUUAUGUUUGCGGUCUGUAAAUAAGCCUGGCAAA_AA_C_AAAACUAAAUCUAAAUCGAAAACGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGGCGAGAGCGG ((((((((((((((((((((((......(.....)........................(((....))).....)))))))))))))....)))))))))............. (-21.70 = -22.70 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:46 2006