Locus 2966

Sequence ID 3R_DroMel_CAF1
Location 7,927,398 – 7,927,491
Length 93
Max. P 0.766508
window4769

overview

Window 9

Location 7,927,398 – 7,927,491
Length 93
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 91.68
Mean single sequence MFE -26.74
Consensus MFE -20.64
Energy contribution -20.00
Covariance contribution -0.64
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.77
SVM decision value 0.52
SVM RNA-class probability 0.766508
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7927398 93 + 27905053
CAGACAUGAAAUCUUAUGGAAAGUAUCUGUG--UGUGUG------UCGGCAAACAGAAACGCUGUCUACGCAUUAAAGAUACAUUUGCAUGAGUGUGGGUG
((..(((.....((((((.(((((((((..(--((((((------.((((..........)))).).))))))...)))))).))).)))))).)))..)) ( -28.60)
>DroSec_CAF1 58640 93 + 1
CAGGCAUGAAAUCUUAUGGAAAGUAUCUGUG--UGUGUG------UCGGCAAACAGAAACGCUGUCUACGCAUUAAAGAUACAUUUGCAUGAGUGUGGGUG
...((.......((((((.(((((((((..(--((((((------.((((..........)))).).))))))...)))))).))).)))))).....)). ( -27.60)
>DroSim_CAF1 60412 95 + 1
CAGGCAUGAAAUCUUAUGGAAAGUAUCUGUGCGUGUGUG------UCGGCAAACAGAAACGCUGUCUACGCAUUAAAGAUACAUUUGCAUGAGUGUGGGUG
...((.......((((((.(((((((((....(((((((------.((((..........)))).).))))))...)))))).))).)))))).....)). ( -26.50)
>DroEre_CAF1 59503 99 + 1
CAGGCAUGAAAUCUUAUGGAAAGUAUCUGUG--UGUGUGUGUGUUUUGGCGCACAGAAACACUGUCUACGCAUUAAAGAUACAUUUGCGCAAGUGUGGGUG
....(((((....)))))....((((((..(--(((((((((((....))))))(((.......)))))))))...))))))(((..((....))..))). ( -26.80)
>DroYak_CAF1 60124 93 + 1
CAGGCAUGAAAUCUUAUGGAAAGUAUCUGUG--UGUGUG------CUGUCACACAGAAACGAUGUCUACGCAUUAAAGAUACAUUUGCAUGAGUGUGGGUG
...((.......((((((.(((((((((.((--((((..------....)))))).....(((((....)))))..)))))).))).)))))).....)). ( -24.20)
>consensus
CAGGCAUGAAAUCUUAUGGAAAGUAUCUGUG__UGUGUG______UCGGCAAACAGAAACGCUGUCUACGCAUUAAAGAUACAUUUGCAUGAGUGUGGGUG
...((.......((((((.(((((((((.....((((((.......((((..........))))..))))))....)))))).))).)))))).....)). (-20.64 = -20.00 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:53 2006