Locus 2965

Sequence ID 3R_DroMel_CAF1
Location 7,926,493 – 7,926,594
Length 101
Max. P 0.719748
window4768

overview

Window 8

Location 7,926,493 – 7,926,594
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.52
Mean single sequence MFE -24.07
Consensus MFE -14.83
Energy contribution -15.92
Covariance contribution 1.09
Combinations/Pair 1.30
Mean z-score -1.49
Structure conservation index 0.62
SVM decision value 0.40
SVM RNA-class probability 0.719748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7926493 101 - 27905053
---------------AGGAAAGAGAAGCUGGUGGGGGCGAAAAAGCUAUAAAUAAGUUGCCAAAUGUUGACCAGAAAUGAAAUAAUUUUUCAAAGAGCCUCCUGCCGGGAUAUGGU----
---------------............((((..(((((.....((((.......))))...................(((((.....)))))....))).))..))))........---- ( -22.20)
>DroSec_CAF1 57754 101 - 1
---------------AGAAAAGAGAAGCUGGUGGGGGCGAAAAAGCUAUAAAUAAGUUGCCAAAUGUUGACCAGAAAUGAAAUAAUUUUUCAGAGAGCCUCCUGCCAGGAUAUGGU----
---------------............((((..(((((.....((((.......))))...................(((((.....)))))....))).))..))))........---- ( -22.90)
>DroSim_CAF1 59531 101 - 1
---------------AGAAAAGAGGAGCUGGUGGGGGCGAAAAAGCUAUAAAUAAGUUGCCGAAUGUUGACCAGAAAUGAAAUAAUUUUUCAAAGAGCCUCCUGCCAGGAUAUGGU----
---------------............((((..(((((.....((((.......))))...(((.((((..((....))...))))..))).....))).))..))))........---- ( -23.00)
>DroEre_CAF1 58546 105 - 1
---------------GGGAAAGGAAAGCUGGCGGGGGCGAAAAUGCUAUAAAUAUGUAGCCAAAUGUUGACCAGAAAUGAAAUAAUUUUUCAGAGGGCCUUUUGCCAGGAUAUAGUACGA
---------------............(((((((((((......((((((....))))))..........((.....(((((.....)))))..))))).))))))))............ ( -25.20)
>DroYak_CAF1 59195 101 - 1
---------------AGGAAAGGGAAGCUGGUGGGGGCGGAGGAGCUAUAAAUAAGUAACCAAAUGUUGACCAGAGAUGAAAUAAUUUUUCAAGGGGCCUCCAGCCAGGAUAUGGU----
---------------............(((((((((((...((.(((.......)))..)).........((.....(((((.....)))))..))))))))).))))........---- ( -25.00)
>DroPer_CAF1 62202 109 - 1
GAGGGUUUCAGAGAUAGAGGGAGGACGCUGCAGG-------GCAGCCAUAAAUAAGUAGGCGAACGUUGACCAAAAACAAAACAAUUUUUAAAAGGACCUCCUGCUGGGGCAGAGU----
....((..(((.......((((((..(((((...-------))))).........((..((....))..))..........................)))))).)))..)).....---- ( -26.10)
>consensus
_______________AGAAAAGAGAAGCUGGUGGGGGCGAAAAAGCUAUAAAUAAGUAGCCAAAUGUUGACCAGAAAUGAAAUAAUUUUUCAAAGAGCCUCCUGCCAGGAUAUGGU____
...........................(((((((((((.....((((.......))))...................(((((.....)))))....)))))).)))))............ (-14.83 = -15.92 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:52 2006