| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,921,586 – 7,921,755 |
| Length | 169 |
| Max. P | 0.762842 |
| Location | 7,921,586 – 7,921,681 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 77.53 |
| Mean single sequence MFE | -13.71 |
| Consensus MFE | -11.49 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7921586 95 + 27905053 CCAUGCAGAAGUGUUAACUCUGUUCAGAUUAGUUUUUAAAGAAAUACCAUUUUUAAUGGUAAGGUUAUAUUUUAUUCUUGUUUUAAAUACGUAUU ....(((((.((....)))))))........((.(((((((...((((((.....))))))((..((.....))..))..))))))).))..... ( -13.20) >DroSec_CAF1 52890 77 + 1 CCAUGCAGAAGUGUUUAUUCUGCUCAGAUUAAAUUUUUAAAAAAUACCAUUCUUAAUGGUAAGGUUAAAUUUAAUUC------------------ ....((((((.......))))))...((((((((((........((((((.....)))))).....)))))))))).------------------ ( -16.22) >DroSim_CAF1 54687 77 + 1 CCAUGCAGAAGUGUUAAUUCUGUUCAGAUUAAAUUUUUUAAAAAUACCAUUCUUAAUGGUAAGGUUAAAUUGAAUUC------------------ ....((((((.......)))))).............(((((...((((((.....))))))...)))))........------------------ ( -11.70) >consensus CCAUGCAGAAGUGUUAAUUCUGUUCAGAUUAAAUUUUUAAAAAAUACCAUUCUUAAUGGUAAGGUUAAAUUUAAUUC__________________ ((..((((((.......)))))).....................((((((.....)))))).))............................... (-11.49 = -11.60 + 0.11)
| Location | 7,921,652 – 7,921,755 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.91 |
| Mean single sequence MFE | -16.97 |
| Consensus MFE | -10.07 |
| Energy contribution | -11.08 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7921652 103 - 27905053 CAUACGAUUUUAUUGUGAUUGUAAAAGUGGUUUUGGGAUACCAUAUAAUUGAGUAUUAAAAGCACGUGAAGAAAAAUACGUAUUUAAAACAAGAAUAAAAUAU ......((((((((.(.....((((....(((((..(((((((......)).))))).)))))(((((........))))).)))).....).)))))))).. ( -15.90) >DroSec_CAF1 52956 81 - 1 CAUACGAUUUUAUUGUGAUUACAGCAGUGGUUUUGGAAUACCAUUUAAUUGAGUUGUAAAAGCACAAGAA----------------------GAAUUAAAUUU .....((((((.(((((.(((((((((((((........)))))).......)))))))...)))))..)----------------------)))))...... ( -17.51) >DroSim_CAF1 54753 81 - 1 CAUACGAUUUUAUUGUGAUUACAGCAGUGGUUUUGGAAUACCAUUUAAUUGAGUUGUAAAAGCACAAGGA----------------------GAAUUCAAUUU .....((((((.(((((.(((((((((((((........)))))).......)))))))...)))))..)----------------------)))))...... ( -17.51) >consensus CAUACGAUUUUAUUGUGAUUACAGCAGUGGUUUUGGAAUACCAUUUAAUUGAGUUGUAAAAGCACAAGAA______________________GAAUUAAAUUU ............(((((.(((((((((((((........)))))).......)))))))...))))).................................... (-10.07 = -11.08 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:50 2006