Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,913,150 – 7,913,256 |
Length | 106 |
Max. P | 0.660169 |
Location | 7,913,150 – 7,913,256 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -27.22 |
Energy contribution | -27.26 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.56 |
Structure conservation index | 0.87 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7913150 106 + 27905053 UUGGCCCAAAUAUCAUGAGCGAUGGAAUCUUUUAUUUAGAUCCAUGGUCAUGUGCGGCAAAUAUUUUGCGCUGUUUUCGGGUUGCCA-----GGUAAACCUGGGUCAGUGA ..(((((......(((((.(.(((((.(((.......)))))))).)))))).(((.(((.....)))))).......))))).(((-----((....)))))........ ( -33.70) >DroSec_CAF1 44358 106 + 1 UUGGGCCAAAUAUCAUGAGCGAUGGAAUUUUUUAUUUAGAUCCAUGGUCGUGUGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCA-----GGUAAACCUGGGUCAGUGA ....(((......(((((.(.(((((.(((.......)))))))).))))))...)))..........(((((..((((((((....-----....)))))))).))))). ( -30.70) >DroSim_CAF1 46132 106 + 1 UUGGGCCAAAUAUCAUGAGCGAUGGAAUUUUUUAUUUAGAUCCAUGGUCGUGUGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCA-----GGUAAACCUGGGUCAGUGA ....(((......(((((.(.(((((.(((.......)))))))).))))))...)))..........(((((..((((((((....-----....)))))))).))))). ( -30.70) >DroEre_CAF1 44888 96 + 1 ---------------UGACCGAUGGCAUUUUUUAUUGAGAUCCGUGGUCAGGGGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCAGGUCAGGUAAAGCUGGGCCAGUGA ---------------(((((.((((.(((((.....))))))))))))))..((((((((.....)))).(((....)))..)))).((((.((.....)).))))..... ( -29.70) >DroYak_CAF1 45342 91 + 1 ---------------UGACCGACGGCAUUUUUUAUUGAGAUCCGUGGUCAUGGGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCC-----GGUAAACCUGGGUCAGUGA ---------------(((((.((((.(((((.....))))))))))))))......((((.....))))((((..((((((((....-----....)))))))).)))).. ( -30.80) >consensus UUGG_CCAAAUAUCAUGAGCGAUGGAAUUUUUUAUUUAGAUCCAUGGUCAUGUGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCA_____GGUAAACCUGGGUCAGUGA .............(((((.(.((((.((((.......)))))))).))))))....((((.....))))((((..(((((((((((......))).)))))))).)))).. (-27.22 = -27.26 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:46 2006