Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,910,465 – 7,910,578 |
Length | 113 |
Max. P | 0.874243 |
Location | 7,910,465 – 7,910,578 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 70.85 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -9.04 |
Energy contribution | -10.58 |
Covariance contribution | 1.54 |
Combinations/Pair | 1.14 |
Mean z-score | -1.94 |
Structure conservation index | 0.39 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7910465 113 + 27905053 AAAUUUGUCUUUGGAAUUUCAUGGCUGUCAGUUUUUCGAUCAGAUAAUCUG-UAUCUAAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGCUCAUGGAAGAUAAG---CUC ...(((((((.......((((((((((((.(((((..((((((.....)))-.))).)))))....((((......))))...........)))))).)))))))))))))---... ( -30.51) >DroSec_CAF1 41682 93 + 1 --------ACUUGGAAUUUCACG------------ACGAUCUGAUAGUCUG-UAUCUAAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGACCCGGCAAGAUAAG---CUC --------.((((.....(((.(------------.....))))..(((((-(.............((((......))))............))))))....)))).....---... ( -14.41) >DroSim_CAF1 43413 111 + 1 -AAUUUGUCUUUGGAAUUUCACGGCUGUCAGUUUUACGAUCUGAUAGUCUG-UAUC-AAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGCCCAGGCAAGAUAAG---CUC -....(((((((((......(((((((((((.........))))))).)))-)...-....)))).((((......))))..........)))))((....))........---... ( -25.62) >DroEre_CAF1 42242 95 + 1 -AAUGU-UUUCUGGAAUUUUUAGGCUGU--------------------CUGUUAUCUUAAACCAAGCCCAUUACUUUGGAAUUAAUAAGAAAACAGCUCAUGCUAGAGAAGCAGCUU -.....-..............(((((((--------------------(((((.(((((....((..(((......)))..))..))))).)))))(((......)))..))))))) ( -19.50) >DroYak_CAF1 42665 103 + 1 -AAUGU----CUGGAAUUUCACGGCUGUCAGUUUAACGAUCUGAUAGUCUGUUAUCUAAAAGAAAAUCCAUCACUUUGGAUUGAUUAAUAAGACAGCCCAUGCAAGAU--------- -..(((----.(((........(((((((((.........))))))))).(((.(((.......((((((......))))))........))).)))))).)))....--------- ( -25.86) >consensus _AAUGU_UCUUUGGAAUUUCACGGCUGUCAGUUU_ACGAUCUGAUAGUCUG_UAUCUAAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGCCCAUGCAAGAUAAG___CUC ......................(((((((........(((......))).................((((......))))...........)))))))................... ( -9.04 = -10.58 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:44 2006