Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,908,734 – 7,908,826 |
Length | 92 |
Max. P | 0.581796 |
Location | 7,908,734 – 7,908,826 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.01 |
Mean single sequence MFE | -27.09 |
Consensus MFE | -17.53 |
Energy contribution | -18.24 |
Covariance contribution | 0.71 |
Combinations/Pair | 1.06 |
Mean z-score | -1.72 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7908734 92 - 27905053 AACUUU------UCCUCCAGCUGGGCACCAGACAAUCCUUUCCCAUAUCCAACCGUGAAUAGUGGCCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC ......------.....(((((((...((((((.((((....((((((.((....)).)).)))).....------)))).)....)))))....))))))).. ( -26.10) >DroSec_CAF1 40018 86 - 1 ------------CCGACCAGCUGGGCGCCAGACAAUCCUUUCCCACAUCCAGCCGUGAAUAGUGGCCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC ------------.....(((((((......................(((((((((.......))))...)------)))).((((.....)))).))))))).. ( -27.50) >DroSim_CAF1 41748 92 - 1 AACUUU------UCCUCCAGCUGGGCGCCAGACAAUCCUUUCCCACAUCCAGCCGUGAAUAGUGGCCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC ......------.....(((((((......................(((((((((.......))))...)------)))).((((.....)))).))))))).. ( -27.50) >DroEre_CAF1 40573 98 - 1 AACUUUUCCUUUUCCUCCAGCUGGGCGGCGGACAAUCCUUUCCCACAUCCAACCGUGAAUAGUGACCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC .................(((((((((((.(((...............)))..))))......(((((...------(((.......))).)))))))))))).. ( -26.66) >DroYak_CAF1 40839 92 - 1 AACUUU------UGCUCCAGCUGGGCGGCGGACAAUCCUUUCCCACAUCCAACCGUGAAUAGUGACCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC ......------.....(((((((((((.(((...............)))..))))......(((((...------(((.......))).)))))))))))).. ( -26.66) >DroAna_CAF1 36244 88 - 1 AACUUU------CCUUCCAGCUGGGCGACCGGCAAUCCUUUCCCACAUCCAG----------GGCCCCACUGAUUGGGUCCGACCUUCUGCGGCACCAGCUGAC ......------.....(((((((((....((.((....)).)).......(----------(((((........))))))...........)).))))))).. ( -28.10) >consensus AACUUU______UCCUCCAGCUGGGCGCCAGACAAUCCUUUCCCACAUCCAACCGUGAAUAGUGGCCAAU______GGAUCGACCUUCUGGGUCACCAGCUGAC .................(((((((..........((((.............((........)).............)))).((((.....)))).))))))).. (-17.53 = -18.24 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:43 2006