Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,903,687 – 7,903,807 |
Length | 120 |
Max. P | 0.637673 |
Location | 7,903,687 – 7,903,807 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.39 |
Mean single sequence MFE | -20.97 |
Consensus MFE | -20.79 |
Energy contribution | -20.90 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.48 |
Structure conservation index | 0.99 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7903687 120 + 27905053 UUCUAUCGAUUUUUCUUAAACAUAAACACAGUUUACCCUUUAAGCCCACAAUUUAUAUCAAUAAAAUUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUCCUAAACUGGCUGAUGCCC ...((((((....)).............(((((((.......((((.(((((....(((((........)))))..((((.....))))))))).))))....)))))))...))))... ( -19.40) >DroSec_CAF1 35076 120 + 1 UUCUAUCGAUUUUUCUAAAACAUAAAUACAGUUUACCCUUUAAGUCUACAAUUUAUAUCAAUAAAAAUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUUCUAAACUGGCUGAUGCCC ...((((((....)).............(((((((.......(..(((((((....(((((........)))))..((((.....)))))))))))..)....)))))))...))))... ( -19.60) >DroSim_CAF1 36852 120 + 1 UUCUAUCGAUUUUUCUAAAACAUAAAUACAGUUUACCCUUUAAGCCUACAAUUUAUAUCAAUAAAAGUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUUCUAAACUGGCUGAUGCCC ...((((((....)).............(((((((.......((((((((((....(((((........)))))..((((.....))))))))))))))....)))))))...))))... ( -23.90) >consensus UUCUAUCGAUUUUUCUAAAACAUAAAUACAGUUUACCCUUUAAGCCUACAAUUUAUAUCAAUAAAAAUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUUCUAAACUGGCUGAUGCCC ...((((((....)).............(((((((.......((((((((((....(((((........)))))..((((.....))))))))))))))....)))))))...))))... (-20.79 = -20.90 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:39 2006