Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,896,866 – 7,896,961 |
Length | 95 |
Max. P | 0.505800 |
Location | 7,896,866 – 7,896,961 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 77.32 |
Mean single sequence MFE | -26.25 |
Consensus MFE | -17.14 |
Energy contribution | -17.20 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.18 |
Mean z-score | -1.15 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7896866 95 + 27905053 UAUU-UGUUAU---GGCA--U--CACCCAACCUUUAAUCAUGGACACAUCGUUGGCACCAUCGCCAAUGGCCAGAGUGACUGCGUUUUUGGCACGCUUUAUUA ....-......---(((.--.--.......((.........))......(((((((......))))))))))((((((..(((.......))))))))).... ( -22.30) >DroVir_CAF1 18114 99 + 1 CUUU-CGUUUGAAGUGUG--UAGGA-CUCACCCUUGAUCAUGGAAACAUCGUUGGCGCCAUCCCCAAUGGCCAGUGUGACGGCAUUUUUGGCACGCUUGAUUA ....-....(.(((((((--(....-.((((.((..((.(((....))).))..).(((((.....)))))..).))))...((....)))))))))).)... ( -23.90) >DroGri_CAF1 13793 89 + 1 U--G-CGC--------CG--UGAUG-CUUACCCUUGAUCAUGGAGACAUCGUUGGCGCCAUCGCCAAUGGCCAGAGUGACGGCAUUUUUGGCACGCUUGAUUA .--(-(((--------((--((((.-(........))))))))......((((((((....))))))))(((((((((....)).))))))).)))....... ( -30.50) >DroEre_CAF1 28719 94 + 1 UAUU-UGUCUU---GGCA--U--CA-CUCACCUUUUAUCAUGGACACAUCGUUGGCGCCAUCGCCAAUGGCCAGAGUUACGGCGUUUUUGGCACGCUUUAUUA ....-..(((.---(((.--.--..-....((.........))......((((((((....)))))))))))))).....(((((.......)))))...... ( -23.00) >DroMoj_CAF1 173525 95 + 1 UAUG-UGUAUG---GGUG--U-GGA-CUCACCCUUGAUCAUGGAGACAUCGUUGGCACCGUCGCCAAUGGCCAGGGUGACAGCAUUUUUGGCACGCUUAAUGA ...(-(((..(---((((--(-...-.(((((((.(...(((....)))(((((((......))))))).).)))))))..))))))...))))......... ( -34.20) >DroAna_CAF1 24935 98 + 1 UAGUUUGCUUU---UAUUUGU-CUA-CUUACCCUUGAUCAUAGACACAUCAUUGGCUCCAUCGCCAAUGGCCAAGGUAACAGCAUUUUUGGCACGUUUGAUUA .(((..((...---.....))-..)-))......((((((..(((....(((((((......)))))))(((((((.........)))))))..))))))))) ( -23.60) >consensus UAUU_UGUUUU___GGCG__U__CA_CUCACCCUUGAUCAUGGACACAUCGUUGGCGCCAUCGCCAAUGGCCAGAGUGACGGCAUUUUUGGCACGCUUGAUUA .......................................(((....)))(((((((......)))))))(((((((.........)))))))........... (-17.14 = -17.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006