Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,892,308 – 7,892,413 |
Length | 105 |
Max. P | 0.940357 |
Location | 7,892,308 – 7,892,413 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -42.14 |
Consensus MFE | -29.82 |
Energy contribution | -32.99 |
Covariance contribution | 3.17 |
Combinations/Pair | 1.05 |
Mean z-score | -2.93 |
Structure conservation index | 0.71 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7892308 105 - 27905053 ACGAGUGCCAGAGGGUUUAAAGUGGGUGAAAGUGGGCGAAAGUGGGACGAUGUGGGCUGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCC----------AUUUCCUUCUGGG .......((((((((....(((((((.(((.(..(((....))(.((((((((((((....)))))))).)))).).....)..)))).)))----------)))))))))))). ( -42.00) >DroSec_CAF1 23794 115 - 1 ACGAGUGCCACAGGGUUUAAAGUGGGUGAAAGUGGGGGAAAGUGGAACGAUGUGGGCGGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCCACUUGGUCGCAUUUCCUUCUGGG .......(((.((((....(((((.(...(((((((((((.(..(.(((((((((((....))))))....))))).....)..))))))))))))...).))))))))).))). ( -44.60) >DroSim_CAF1 24252 115 - 1 ACGAGUGCCAGAGGGUUUAAAGUGGGUGAAAGUGGGCGAAAGUGGAACGAUGUGGGCGGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCCACUUGGUCGCAUUUCCUUCUGGG .......((((((((....(((((.(...(((((((.(((.(..(.(((((((((((....))))))....))))).....)..)))).)))))))...).))))))))))))). ( -47.20) >DroEre_CAF1 24124 113 - 1 ACGAGUGCCAGAGGGCUUAAAGUGGGCGAAAGUGGGCGAAAGUGGAACGAUGUGGAUUGGAGCGCAUGUGUGUUGUGUUAACUGCUUC--CCACUUGGUCGCAUUUCCUUCUGGG .......((((((((....((((((((..(((((((...(((..(..((((....)))).((((((.......))))))..)..))))--)))))).))).))))))))))))). ( -40.40) >DroYak_CAF1 24308 105 - 1 ACGAGUGCCAGAGGGUUUAAAGUGGGUGAA--------AAAGUGGGUCGAUGUGGGUUGAAGCGCAUGUGUGUUGUGUUAACUGCUUC--CCACUUGGUCGCAUUUCCUUCUGGG .......((((((((...(((....((((.--------.(((((((.....(..(.....((((((.......))))))..)..)..)--))))))..)))).))))))))))). ( -36.50) >consensus ACGAGUGCCAGAGGGUUUAAAGUGGGUGAAAGUGGGCGAAAGUGGAACGAUGUGGGCUGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCCACUUGGUCGCAUUUCCUUCUGGG .......((((((((....(((((.(...(((((((.(((.(..(((((((((((((....)))))))).)))).......)..)))).)))))))...).))))))))))))). (-29.82 = -32.99 + 3.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:34 2006