Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,890,355 – 7,890,463 |
Length | 108 |
Max. P | 0.926204 |
Location | 7,890,355 – 7,890,463 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 95.94 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -27.16 |
Energy contribution | -27.00 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.39 |
Structure conservation index | 0.94 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7890355 108 - 27905053 CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA-CG .....(((((...(((((.(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))....)))))))))).......-.. ( -30.50) >DroSec_CAF1 21856 108 - 1 CAAGAUAGAUACCGUUGCUGACAACUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA-CG .....(((((...(((((.(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))....)))))))))).......-.. ( -30.50) >DroSim_CAF1 22288 108 - 1 CAAGAUAGAUACCGUUUCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA-CG .....((((((..((....(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))....))..)))))).......-.. ( -27.00) >DroEre_CAF1 22190 109 - 1 CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUCCUGCUUUUCCGCUAUAUCUGGCCAAAAGCG .............(..((((((((((.(((.((((((((((...)))))))))).))).).)))))).......)))..).((((((..((((....)))).)))))). ( -29.01) >DroYak_CAF1 22336 108 - 1 CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUUUCCUCUAUAUCUGGCCAAAA-CG .....((((((........(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))........)))))).......-.. ( -27.00) >consensus CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA_CG .....((((((........(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))........)))))).......... (-27.16 = -27.00 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:32 2006