Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,127,722 – 1,127,821 |
Length | 99 |
Max. P | 0.766487 |
Location | 1,127,722 – 1,127,821 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.52 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -20.80 |
Energy contribution | -21.48 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.11 |
Mean z-score | -2.35 |
Structure conservation index | 0.74 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1127722 99 + 27905053 CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAAAUAAACAGCGGCGGCAGCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((((((((.......(((((....)))))........))))))))..... ( -28.06) >DroSec_CAF1 61684 99 + 1 CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGACGGCAGCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((.(((.(((((((.....(((....))).....))))))).))).)).. ( -27.50) >DroSim_CAF1 62261 99 + 1 CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGACGGCAGCAAAUACUAAAUAAUUAUUCAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((.(((.(((((((....................))))))).))).)).. ( -26.55) >DroEre_CAF1 62338 96 + 1 CAGCUGGCAGCAGGCGCAUGCAAAGUACCUUUGUUCGCAGAUAAACAGCGGCG---GCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCACUCG ..((((.......(((...((((((...)))))).))).......))))((((---(((((((.....(((....))).....)))))))))))..... ( -29.94) >DroYak_CAF1 82795 96 + 1 CAACUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGGCG---GCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCACUCG ...(((((((.((((((.......))))))))))...))).........((((---(((((((.....(((....))).....)))))))))))..... ( -28.30) >consensus CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGGCGGCAGCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((.(((.(((((((.....(((....))).....))))))).))).)).. (-20.80 = -21.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:44 2006