Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,889,744 – 7,889,843 |
Length | 99 |
Max. P | 0.907659 |
Location | 7,889,744 – 7,889,843 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -12.54 |
Energy contribution | -12.32 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.38 |
Mean z-score | -2.71 |
Structure conservation index | 0.49 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7889744 99 + 27905053 ----UUUUUUUGUG-CCAUUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCAUUUAAGCCUUUCAC----------- ----..(((..(((-(((((..((((((((..((..............))..)))))).))((--.((((((..-.)))))).)).))))))))..)))........----------- ( -24.24) >DroPse_CAF1 19873 117 + 1 GCUCUUUUUUCGGGUGCAUUC-GUAUUGCAUUUUAUUAAUUAACAUUCAAUUAGCGAAAAUUAAUUCGCGGCCCUGGCUCCAUUCAAGUGGCAUUUAAGCCAUUCAUUGGGCUUUUUU ...........(((((((...-....)))........................(((((......))))).)))).(((.(((....((((((......))))))...))))))..... ( -28.60) >DroSec_CAF1 21186 99 + 1 ----UUUUUUUGUG-CCAUUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCAUUUAAGCCUUUAAC----------- ----..(((..(((-(((((..((((((((..((..............))..)))))).))((--.((((((..-.)))))).)).))))))))..)))........----------- ( -24.24) >DroEre_CAF1 21524 97 + 1 ----UU--UUUGUG-CCACUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCAUUUAAGCUUUUCGC----------- ----((--(..(((-(((((..((((((((..((..............))..)))))).))((--.((((((..-.)))))).)).))))))))..)))........----------- ( -26.34) >DroYak_CAF1 21652 98 + 1 ----UU-UUUUGUG-CCAUCUAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUGCGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCGUUUAAGCCUUUCAC----------- ----..-......(-((((...((((((((..((..............))..)))))).))((--.((((((..-.)))))).))..)))))...............----------- ( -21.24) >DroPer_CAF1 19542 117 + 1 GCUCUUUUUUCGGGUGCAUUC-GUAUUGCAUUUUAUUAAUUAACAUUCAAUUAGCGAAAAUUAAUUCGCGGCCCUGGCUCCAUUCAAGUGGCAUUUAAGCCAUUCAUUGGGCUUUUUU ...........(((((((...-....)))........................(((((......))))).)))).(((.(((....((((((......))))))...))))))..... ( -28.60) >consensus ____UUUUUUUGUG_CCAUUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA__UUGUGGCCU_UGCCGCAUUCAAGUGGCAUUUAAGCCUUUCAC___________ .....................................................((((........))))(((...((((((......)))))).....)))................. (-12.54 = -12.32 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:31 2006