Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,883,982 – 7,884,074 |
Length | 92 |
Max. P | 0.648911 |
Location | 7,883,982 – 7,884,074 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -18.94 |
Energy contribution | -19.22 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.52 |
Structure conservation index | 0.76 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7883982 92 - 27905053 C-------------------UGCUUG---UG-----GAUCUGCGUAUGUUCUAUUUUUUAUGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAGGCGACUUGCAGACAAACACAUC .-------------------....((---((-----..((((((((((((.((.....)).))))))).....(((((((..((((....).)))..))))))))))))....)))).. ( -26.90) >DroPse_CAF1 13578 108 - 1 CCUGGGAAU------GGGAAUGCUCGGGAUG-----GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUACUCUCAACAAAAGCAUCUCGCAGACAAACACAUC ((((((.((------....)).))))))...-----..(((((((((((..((.....))..)))))).......((((.((.....))))))...........))))).......... ( -24.70) >DroEre_CAF1 15954 92 - 1 C-------------------UGCAUG---GG-----GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAGGCGACUUGCAGACAAACACAUC .-------------------....((---..-----(.(((((((((((..((.....))..)))))).....(((((((..((((....).)))..)))))))))))))...)).... ( -24.10) >DroYak_CAF1 15878 97 - 1 C-------------------UGCAUG---GGGAUGGGAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAGGCGACUUGCAGACAAACACAUC .-------------------......---..(((((..(((((((((((..((.....))..)))))).....(((((((..((((....).)))..))))))))))))....).)))) ( -25.90) >DroAna_CAF1 13208 92 - 1 C-------------------UGCUCG---GG-----CAUUUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAAGCAACUCGCAGACAAACACAUC .-------------------(((...---.)-----))(((((((((.((.........)).)))))))))....((((((((((((((.....))))))))).))).))......... ( -24.10) >DroPer_CAF1 13165 114 - 1 CCUGGGAAUGGGAAUGGGAAUGCUCGGGAUG-----GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUACUCUCAACAAAAGCAUCUCGCAGACAAACACAUC ((((((.((..........)).))))))...-----..(((((((((((..((.....))..)))))).......((((.((.....))))))...........))))).......... ( -23.80) >consensus C___________________UGCUCG___GG_____GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAAGCAACUCGCAGACAAACACAUC ......................................(((((((((((..((.....))..))))))......((((((..(((.......)))..)))))).))))).......... (-18.94 = -19.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:29 2006