Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,879,183 – 7,879,299 |
Length | 116 |
Max. P | 0.544792 |
Location | 7,879,183 – 7,879,299 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -19.77 |
Energy contribution | -19.25 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.25 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7879183 116 - 27905053 AAACAAGUCGCGACAUUUUAAGAAUAUUAAAGUAGUUUUCUAAAUGGCUGACCCCGGUCACAUCUUGGAAAUAUUAUUAUGACCCCACUGAGUGGAAAAUU--ACUUCGCUUGUUGCA .........((((((.(((((.....)))))(((((((((((..((((((....))))))..((.(((..(((....)))....)))..)).)))))))))--))......)))))). ( -26.50) >DroSec_CAF1 10695 116 - 1 AAACAAGUUGCGACAUUUUAAGAAUAUUAAAGUAGCUUUCUCAAUGGCUGACCCCGGUCACAUCUUGGAAAUAUUAUUAUGACCCCACUGAGUGGAAAAUU--ACUUCGCUUGUUGCA ........((((((.((((((((..........((((........))))(((....)))...))))))))...................(((((((.....--..))))))))))))) ( -24.80) >DroSim_CAF1 10939 116 - 1 AAACAAGUUGCGACAUUUUAAGAAUAUUAAAGUAGCUUUCUAAAUGGCUGACCCCGGUCACAUCUUGGAAAUAUUAUUAUGACCCCACUGAGUGGAAAAUU--ACUUCGCUUGUUGCA ........((((((.((((((((..........((((........))))(((....)))...))))))))...................(((((((.....--..))))))))))))) ( -24.80) >DroEre_CAF1 11151 116 - 1 AAACUAGUUGCGACAAUUUAAGAAUAUGAAAGUUGCUUUCUAAAUGGCUGACCCCGGUCACAUCUUGGAAAUAUUAUUAUGACCCCACUGAGCGGAAAAUU--ACUUCGCUUGUUGCA ........((((((..(((((((....(((((...)))))....((((((....))))))..)))))))....................(((((((.....--..))))))))))))) ( -26.60) >DroYak_CAF1 11028 116 - 1 AAACAAGUUGCGACACUUUAAGAAUAUGAAAGUAGUUUUCUAAAUGGCUGACCCCGGUCACAUCUUGGAAAUAUUAUUAUGACCCCACUGAGUGGAAAAUU--ACUUCGCUUGUUGCA ........((((((((.....).....(((.(((((((((((..((((((....))))))..((.(((..(((....)))....)))..)).)))))))))--)))))...))))))) ( -25.80) >DroPer_CAF1 6665 97 - 1 AAUCA--UUUCAAC-------------------AUUUUUCGCUUUUACUGGCCUGGGCCACAUAAGGGAAAUAUGAUUAUGGGGCAGCUAAGUGGAAUAUAUCCUUUCGCUUGUUGCA ..(((--(.....(-------------------((.((((.(((....((((....))))...))).)))).)))...)))).(((((.((((((((.......))))))))))))). ( -28.90) >consensus AAACAAGUUGCGACAUUUUAAGAAUAUUAAAGUAGCUUUCUAAAUGGCUGACCCCGGUCACAUCUUGGAAAUAUUAUUAUGACCCCACUGAGUGGAAAAUU__ACUUCGCUUGUUGCA .........(((((......................(((((((...(.((((....)))))...)))))))..................(((((((.........)))))))))))). (-19.77 = -19.25 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:28 2006