Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,878,327 – 7,878,422 |
Length | 95 |
Max. P | 0.887169 |
Location | 7,878,327 – 7,878,422 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -22.98 |
Energy contribution | -23.98 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.81 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.887169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7878327 95 + 27905053 ------UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUACCUUCGCUGUUUAUUUUUUGUGGCCCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA ------....(.((((..((((.((..((.((((((((...((....((..(.........)..))....)).))))))))))..)).))))..)))).). ( -25.90) >DroSec_CAF1 9980 95 + 1 ------UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUAGCUUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA ------....(.((((..((((.((..((.((((((((...((((((((..(.........)..))).)))))))))))))))..)).))))..)))).). ( -31.10) >DroSim_CAF1 10139 95 + 1 ------UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUAGCUUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA ------....(.((((..((((.((..((.((((((((...((((((((..(.........)..))).)))))))))))))))..)).))))..)))).). ( -31.10) >DroEre_CAF1 10334 94 + 1 AUGCGAUGCUGAUGCUCCUGCCACACUUGCUUGUACC-------UUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA ..........(.((((..((((.((..((.(((((((-------(((((.(((..........)))))))...))))))))))..)).))))..)))).). ( -26.90) >DroYak_CAF1 10214 82 + 1 ------------UGCUCGUGCAACAUUUGCUUGUACC-------UUCGCUGUUUAUUUUUUGUGUCGCGAGUUAGGUGCGAUAUUUGGGGCAUAAGCGCCA ------------.(((..(((..((..((.(((((((-------(((((....(((.....)))..))))...))))))))))..))..)))..))).... ( -26.90) >consensus ______UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUA_CUUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA .............(((..((((.((..((.((((((((......(((((.(((..........))))))))..))))))))))..)).))))..))).... (-22.98 = -23.98 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:27 2006