Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,875,884 – 7,876,004 |
Length | 120 |
Max. P | 0.732837 |
Location | 7,875,884 – 7,876,004 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -37.33 |
Consensus MFE | -32.21 |
Energy contribution | -32.54 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.86 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7875884 120 + 27905053 CUGGGUUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU .(((((.((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..))))). ( -39.86) >DroPse_CAF1 2653 120 + 1 CUGGUGUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUCGAGUACCCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUUAU ..(((..((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..)))... ( -35.46) >DroEre_CAF1 7996 120 + 1 CUGGGUUCGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU .(((((..(((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...)))...))))). ( -38.16) >DroYak_CAF1 7864 120 + 1 CUGGGUUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU .(((((.((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..))))). ( -39.86) >DroAna_CAF1 5372 120 + 1 CCGGCUUUGGAAUGCGCUCUUUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAACGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU ..(((..((((..((((((..(((.........)))..))))))..((((((((..(((.(((.......))))))..))))))))......................))))..)))... ( -35.20) >DroPer_CAF1 2671 120 + 1 CUGGUGUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUCGAGUACCCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUUAU ..(((..((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..)))... ( -35.46) >consensus CUGGGUUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU ........(((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...)))......... (-32.21 = -32.54 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006