Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,875,515 – 7,875,610 |
Length | 95 |
Max. P | 0.507699 |
Location | 7,875,515 – 7,875,610 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.82 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -15.33 |
Energy contribution | -15.72 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7875515 95 + 27905053 CCAGAGUGCGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAACACCCGUAUCUA------------- ...((.((.((((.((((.......)))).))))((.(((...((.((.....)).))..)))))..)).)).(((((((........)))))))------------- ( -25.20) >DroPse_CAF1 2262 103 + 1 AGAGAUGGAGAGUGCAUUAAAGUUAAAUGGACUUGGACUAAAUGCUGCAAAUAGCUGCCAUAACAAACAGU-AUGGACACA----CCAGAAUCCAGAUGUAGUAUAUA .....(((.((((.((((.......)))).))))...))).((((((((....((((..........))))-.((((..(.----...)..))))..))))))))... ( -19.70) >DroSec_CAF1 7177 95 + 1 CCAGAGUGCGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAGCACCAGUAUCUA------------- ....(((.(((((.((((.......)))).))))).)))..((((((.....((((.((((..(.....)..)))).....)))).))))))...------------- ( -26.70) >DroSim_CAF1 7318 95 + 1 CCAGACUGCGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAGCACCCGUAUCUA------------- ...(((((.((((.((((.......)))).))))((.(((...((.((.....)).))..)))))..))))).(((((((........)))))))------------- ( -29.10) >DroEre_CAF1 7638 95 + 1 CCAGAGUGAGAGUGCAUUAAAGUUAAAUGGACUCGUACUAAAUGCUGCAAAUUGCUGCCAUAGCCAGCAGUCAUGGAUACAAGCACCCGUAUCUA------------- ....((((.((((.((((.......)))).)))).))))..(((((((.....((((...))))..)))).)))((((((........)))))).------------- ( -24.10) >DroPer_CAF1 2287 100 + 1 AGAGAUGGAGAGUGCAUUAAAGUUAAAUGGACUUGGACUAAAUGCUGCAAAUAGCUGCCAUAACAAACAGU-AUGGACACA----CCAGAAACCAGAUGU---AUAUA .....(((.((((.((((.......)))).))))((.......((((....))))(((((((........)-)))).))..----)).....))).....---..... ( -17.30) >consensus CCAGAGUGAGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAGCACCAGUAUCUA_____________ .........((((.((((.......)))).)))).........((.((.....)).))...............(((((((........)))))))............. (-15.33 = -15.72 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:24 2006