Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,871,534 – 7,871,685 |
Length | 151 |
Max. P | 0.905154 |
Location | 7,871,534 – 7,871,651 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.75 |
Mean single sequence MFE | -38.13 |
Consensus MFE | -28.62 |
Energy contribution | -29.10 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.33 |
Mean z-score | -3.21 |
Structure conservation index | 0.75 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7871534 117 + 27905053 --UUGAG-GUGGAGGGAACGAUUGCCUGGGUUUUCCGAAAUUAACAAGACAUUUAUGCGGACACACACACAAAGGUGUGUCUCCGGCAAUCGUAUUCCCAUCUUCUUCAUCAUCAACAAA --.((((-(.((((((((((((((((..((....))......................(((.((((((......)))))).))))))))))))..)))).))).)))))........... ( -42.80) >DroSec_CAF1 3327 116 + 1 --UUGA--GUGGAGGGAACGAUUGCCUGGGUUUUCUGGAAUUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAUCGUAUUCCCAUCUUCUUCAUCAUCAACAAA --.(((--(.(((((((((((((((((((((.(..((.......))..).)))))...((((((((((......)))))))))))))))))))..)))).)))..))))........... ( -43.70) >DroSim_CAF1 3334 116 + 1 --UUGA--GUGGAGGGAACGAUUGCCUGGGUUUUCUGGAAUUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAACGUAUUCCCAUCUUCUUCAUCAUCAACAAA --.(((--(.((((((((((.((((((((((.(..((.......))..).)))))...((((((((((......))))))))))))))).)))..)))).)))..))))........... ( -39.10) >DroEre_CAF1 3386 116 + 1 --UUGA--GUGGAGGCAACGAUUGCCUGGGUUUUCAGAAAUUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAUCGUAUACCCAUCUUGUUCGUCAUCAACAAA --..((--((((.(...(((((((((...(((((...........)))))........((((((((((......)))))))))))))))))))...)))).)))................ ( -38.50) >DroYak_CAF1 3343 116 + 1 --UUGA--GUGGAGGCAACGAUUGCCUGGGUUUUCAGAAAUUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUUCGACAAUCGUAUCCCCAUCUUGUUCAUCAUCAACAAA --..((--((((.((..(((((((.((((....))))....................(((((((((((......))))))))))).)))))))..))))).)))................ ( -33.80) >DroAna_CAF1 801 110 + 1 GUCUGAGAAUGGA---UAUGCUGGCUUAGGGUUGUAAAAAUUAACAAGACAUUUAUGCAGGGACACACACAAAGGUGUGCUCCUGGAAAUCGUAGCCGCAUCCC-UCCCACAUC------ ((..(((...(((---..(((.((((..(..((((........))))..).....(.((((..(((((......)))))..)))).)......)))))))))))-))..))...------ ( -30.90) >consensus __UUGA__GUGGAGGGAACGAUUGCCUGGGUUUUCAGAAAUUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAUCGUAUUCCCAUCUUCUUCAUCAUCAACAAA ........((((.((..(((((((((..(((((....)))))................((((((((((......)))))))))))))))))))..))))))................... (-28.62 = -29.10 + 0.48)
Location | 7,871,571 – 7,871,685 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 85.07 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -24.07 |
Energy contribution | -24.13 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.35 |
Mean z-score | -2.72 |
Structure conservation index | 0.81 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7871571 114 + 27905053 UUAACAAGACAUUUAUGCGGACACACACACAAAGGUGUGUCUCCGGCAAUCGUAUUCCCAUCUUCUUCAUCAUCAACAAACUACUGACUUGGCAUAAAUUAGCCGAGUGAAAAA- ...............((((((.((((((......)))))).))).)))....................................(.(((((((........))))))).)....- ( -25.90) >DroSec_CAF1 3363 114 + 1 UUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAUCGUAUUCCCAUCUUCUUCAUCAUCAACAAACUACUGUCUUGGCAUAAAUUAGCCGAGUGAAAAA- ...............(((((((((((((......)))))))))).))).................((((......(((......)))((((((........))))))))))...- ( -29.70) >DroSim_CAF1 3370 114 + 1 UUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAACGUAUUCCCAUCUUCUUCAUCAUCAACAAACUACUGUCUUGGCAUAAAUUAGCCGAGUGAAAAA- .....((((.....((((((((((((((......))))))))))(.....))))).....)))).((((......(((......)))((((((........))))))))))...- ( -29.90) >DroEre_CAF1 3422 114 + 1 UUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAUCGUAUACCCAUCUUGUUCGUCAUCAACAAACUACUGUCUUGGCAUAAAUUAGCCGAGUGAGACA- ..(((((((....(((((((((((((((......))))))))))(.....))))))....))))))).(((.((((((......)))((((((........)))))))))))).- ( -38.40) >DroYak_CAF1 3379 115 + 1 UUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUUCGACAAUCGUAUCCCCAUCUUGUUCAUCAUCAACAAACUACUGUCUUGGCAUAAAUUAGCCGAGUGAGAAAG ..(((((((.....((((((((((((((......))))))))))(.....))))).....)))))))................((..((((((........))))))..)).... ( -31.90) >DroAna_CAF1 838 97 + 1 UUAACAAGACAUUUAUGCAGGGACACACACAAAGGUGUGCUCCUGGAAAUCGUAGCCGCAUCCC-UCCCACAUC--------CCUAUGGCAACAUAAAUUAGCCGG--------- ..........(((((((((((..(((((......)))))..)))).........((((......-.........--------....))))..))))))).......--------- ( -21.61) >consensus UUAACAAGACAUUUAUGCGGGGACACACACAAAGGUGUGUCUCCGGCAAUCGUAUUCCCAUCUUCUUCAUCAUCAACAAACUACUGUCUUGGCAUAAAUUAGCCGAGUGAAAAA_ .................(((((((((((......)))))))))))..........................................((((((........))))))........ (-24.07 = -24.13 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:20 2006