Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,126,143 – 1,126,242 |
Length | 99 |
Max. P | 0.683946 |
Location | 1,126,143 – 1,126,242 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -37.90 |
Consensus MFE | -28.79 |
Energy contribution | -28.93 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.28 |
Mean z-score | -2.07 |
Structure conservation index | 0.76 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1126143 99 + 27905053 CUGCUCACUGGUUUACUUCCGGAAGAAGGAGGACCCGUGGAACGCCAUAAUUAGUGGAGCAACCACCGGGGGCAUUCUUGCUGCUAGAACUGGUGAGUU ..((((((..((((.(((((.......))))).(((((((....((((.....)))).....))).))))((((....))))....))))..)))))). ( -39.70) >DroSec_CAF1 60049 99 + 1 CUGCUCACUGGUUUACUUCCGGAAGAAGGAGGAUCCGUGGAACGCCAUAAUUAGUGGAGCGACCACCGGGGGCAUUCUUGCUGCCAGAACUGGUGAGUU ..((((((..((((.(((((.......)))))....((((....((((.....)))).....)))).((.((((....)))).)).))))..)))))). ( -39.50) >DroSim_CAF1 60607 99 + 1 CUGCUCACUGGUUUACUUCCGGAAAAAGGAGGAUCCGUGGAACGCCAUAAUUAGUGGAGCGACCACUGGGGGCAUUCUUGCUGCCAGAACUGGUGAGUU ..((((((..((((.(((((.......)))))....((((....((((.....)))).....))))(((.((((....)))).)))))))..)))))). ( -40.40) >DroEre_CAF1 60604 99 + 1 CUGUUCCCUGGUUCACUUCCGGAAGAAGGAGGACCCGUGGAACUCCAUAAUUAGUGGGGCAGUCACCGGGGGCAUUCUAGCUGCUCGAACUGGUGAGUU ((((((((((((((.(((.(....).))).))))).((((....))))....)).)))))))((((((((((((.......)))))...)))))))... ( -38.00) >DroYak_CAF1 80977 99 + 1 CUGUUCACUGGUUCACUUCCGGAAGAAGGAGGAUCCGUGGAACGCUAUAAUUAGUGGUGCGACCACCGGGGGCAUUCUCGCUGCUCGAACUGGUGAGUU ...(((((..((((.(((((.......)))))..((((((..((((((.....))))))...))).)))(((((.......)))))))))..))))).. ( -37.70) >DroAna_CAF1 57380 90 + 1 UUGCACCCUGGUCUACUAUCGCCAGAAGGAGGAUCCGUGGAACUCGAUCAUUAGUGGAGCGGCGACUGGGGGCGUCUUGGCGGCCAGGAC--------- ..((.(((..(((....(((.((....))..)))((((...(((........)))...)))).)))..)))))(((((((...)))))))--------- ( -32.10) >consensus CUGCUCACUGGUUUACUUCCGGAAGAAGGAGGAUCCGUGGAACGCCAUAAUUAGUGGAGCGACCACCGGGGGCAUUCUUGCUGCCAGAACUGGUGAGUU ...(((((..((((.(((((.......))))).(((((((....((((.....)))).....)))).)))((((.......)))).))))..))))).. (-28.79 = -28.93 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:43 2006