Locus 2939

Sequence ID 3R_DroMel_CAF1
Location 7,869,914 – 7,870,015
Length 101
Max. P 0.665035
window4729

overview

Window 9

Location 7,869,914 – 7,870,015
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 98.02
Mean single sequence MFE -28.97
Consensus MFE -27.09
Energy contribution -27.53
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.94
SVM decision value 0.28
SVM RNA-class probability 0.665035
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7869914 101 + 27905053
AGAAAGUGGCGCUCAGAUCCCGGGAACCCAUGUUUGCACUUGCCACUCUCGCCAAGUGGCCAACAGUCAAAUAAGCAAUCUACCACAUGAAAAUGUGUGGA
.((.(((((((..(((((...((....))..)))))....))))))).))((....((((.....)))).....))..(((((.((((....))))))))) ( -29.30)
>DroSec_CAF1 1771 101 + 1
AGAAAGUGGCGCUCAGAUCCCGGGAACCCAUGUUUGCACUUGCCACUCUCGCCAAGUGGCCAACAACCAAAUAAGCAAUCUACCACAUGAAAAUGUGUGGA
.((.(((((((..(((((...((....))..)))))....))))))).))(((....)))..................(((((.((((....))))))))) ( -28.90)
>DroSim_CAF1 1779 101 + 1
AGAAAGUGGGGCUCAGAUCCCGGGAACCCAUGUUUGCACUUGCCACUCUCGCCAAGUGGCCAACAGCCAAAUAAGCAAUCUACCACAUGAAAAUGUGUGGA
.((.(((((((..(((((...((....))..)))))..))..))))).))((....((((.....)))).....))..(((((.((((....))))))))) ( -28.70)
>consensus
AGAAAGUGGCGCUCAGAUCCCGGGAACCCAUGUUUGCACUUGCCACUCUCGCCAAGUGGCCAACAGCCAAAUAAGCAAUCUACCACAUGAAAAUGUGUGGA
.((.(((((((..(((((...((....))..)))))....))))))).))((....((((.....)))).....))......((((((......)))))). (-27.09 = -27.53 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:14 2006