Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,869,564 – 7,869,661 |
Length | 97 |
Max. P | 0.912578 |
Location | 7,869,564 – 7,869,661 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 90.04 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -27.80 |
Energy contribution | -28.00 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.80 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7869564 97 - 27905053 AAGGAUCCACCUGUGAGU------------GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA ..........(((((.((------------((((((......))))))))..((((.(((((..((............))..)))))..)))).))))).......... ( -32.30) >DroSec_CAF1 1437 97 - 1 UAGGAUCCACCUGUGAGU------------GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA ..........(((((.((------------((((((......))))))))..((((.(((((..((............))..)))))..)))).))))).......... ( -32.30) >DroSim_CAF1 1443 97 - 1 UAGGAUCCACCUGUGAGU------------GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA ..........(((((.((------------((((((......))))))))..((((.(((((..((............))..)))))..)))).))))).......... ( -32.30) >DroEre_CAF1 1420 109 - 1 AAGGAUCCACCUGUGAGUGUCAGUGUGAGUGUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCGCACUGCAACGCAAAA .(((.....)))(((..((.((((((..((((((((......))))))))..((((.(((((..((............))..)))))..)))))))))))).))).... ( -38.60) >DroYak_CAF1 1430 109 - 1 AAGGAUCCACCUGUGAGUGUGAGUGUGAGAGUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGUCUGCCACACAGCCACGCAAAA .(((.....)))....(((((..((((...(((((((......)))))))..((((((((((..((............))..)))))).)))).))))..))))).... ( -38.40) >consensus AAGGAUCCACCUGUGAGU____________GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA ..........(((((...............(((((((......)))))))..((((.(((((..((............))..)))))..)))).))))).......... (-27.80 = -28.00 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:13 2006