Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,868,473 – 7,868,593 |
Length | 120 |
Max. P | 0.978711 |
Location | 7,868,473 – 7,868,593 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.56 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -21.48 |
Energy contribution | -21.96 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.82 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7868473 120 - 27905053 AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACACGAGAUCCAUUCUCACCACGAAUGAAAAAUACCCAGUGUUCAGCUAUUUUUUAUCGUGUUCCAAAAAAAACUGCUUGGAGGCCA ...((((............)))).......(((....((((.....))))..(((((.((((((((....(((.....)))))))))))))))).(((((..........)))))))).. ( -25.20) >DroSec_CAF1 364 119 - 1 AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACCCGAGAUCCAUUCUCACCGCGAAUGAAAAAUAGCCAGUGUUCAGCUAUUUUUUAUCGUGUCCCAAA-AAAACCGCGUGGAGGCCA .....(((((((((((......)))))))))((((.(((((.....))))..(((((.(((((((((((.........)))))))))))))))).......-......).)))).))... ( -31.10) >DroSim_CAF1 366 120 - 1 AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACCCGAGAUCCAUUCUCACCGCGAAUGAAAAAUACCCAGUGUUCAGCUAUUUUUUAUCGUGUCCCAAAAAAAACCGCUUGGAGGCCA ...(((((((((((((......)))))))))......((((.....))))..(((((.((((((((....(((.....))))))))))))))))..................)))).... ( -24.30) >DroEre_CAF1 368 119 - 1 AAACUCCCAAUUUAUUAAAAGAGAUAAAUUGCCAACCGAGAUCCAUUCUCACCGCUACUGAAACACACCCAGUGUUCGGCUAUUUUUUAUCAUGUCUCAAA-AAAAACGCUUGGAGGCCA ...((((.............(((((((((.(((....((((.....)))).........(((.(((.....))))))))).)))........))))))...-..........)))).... ( -22.67) >DroYak_CAF1 371 119 - 1 AAACUCUCAAUUUAUUAACAGAGAUAAAUUGCCACCCGAGAUUCAUUCUCACCGCGAGUGAAAAAUACCCAGUGUUCGGCUAUUUUUUAUCGUGUCCCAAA-AAAACCGCUUGGAGGCCA ........((((((((......))))))))(((.((.((((.....))))..(((((.(((((((((.((.......)).)))))))))))))).......-..........)).))).. ( -27.10) >consensus AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACCCGAGAUCCAUUCUCACCGCGAAUGAAAAAUACCCAGUGUUCAGCUAUUUUUUAUCGUGUCCCAAA_AAAACCGCUUGGAGGCCA ...(((((((((((((......)))))))))......((((.....))))..(((((.(((((((((.(.........).))))))))))))))..................)))).... (-21.48 = -21.96 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:12 2006