Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,864,696 – 7,864,825 |
Length | 129 |
Max. P | 0.860145 |
Location | 7,864,696 – 7,864,803 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 77.90 |
Mean single sequence MFE | -21.42 |
Consensus MFE | -13.35 |
Energy contribution | -13.94 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.19 |
Mean z-score | -1.80 |
Structure conservation index | 0.62 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.860145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7864696 107 + 27905053 -AACCGACCGACCGACAGCCAACCACCCACUUUUCCCACCACCCAAGGCCG-----------CGGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAG -.......((.(((.(.(((..........................))).)-----------))).....((.(((((((((..............))))))))).))......))... ( -21.41) >DroPse_CAF1 27254 111 + 1 AAAC-AACCCAUC---GACCAACCAUCCAA----CCAACCAUCGAAAACCCCUCUGUACAGCCAACAAACUGUCGAUGGGAAUAAAAUAAACCAAUUUCCCAUCGUCGCAUUGCCGAAG ....-.......(---(((...........----.....................(.((((........)))))((((((((..............))))))))))))........... ( -17.94) >DroSec_CAF1 25535 107 + 1 -AACGGACCGACCUACAGCUAACCACCAAAUUUUCCCACCACCCAAGGCCG-----------CGGAAAACCUUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAG -..(((..((((..................(((((((.((......))..)-----------.)))))).....((((((((..............)))))))))))).....)))... ( -23.54) >DroSim_CAF1 25844 107 + 1 -AACGGACCGACCUACAGCCAAACACCCACUUUUCCCACCAUCCAAGGCCG-----------CGGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAG -..(((..((((..................(((((((.((......))..)-----------.)))))).....((((((((..............)))))))))))).....)))... ( -23.34) >DroEre_CAF1 25720 99 + 1 -AACGGAC--------ACCCACCCACCCACUUUUCGCACCACCCGAGGCCG-----------CAGAAAACCGUCGGUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAG -..(((.(--------(.............(((((((.((......))..)-----------).))))).((.(((((((((..............))))))))).))...)))))... ( -22.54) >DroYak_CAF1 26082 86 + 1 -AACGGAC--------ACCCACCCC-------------CCACGCAAGGCCG-----------CAGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAG -..(((.(--------(........-------------....((......)-----------).......((.(((((((((..............))))))))).))...)))))... ( -19.74) >consensus _AACGGACCGACC___AGCCAACCACCCACUUUUCCCACCACCCAAGGCCG___________CAGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAG ...(((................................((......))......................((.(((((((((..............))))))))).)).....)))... (-13.35 = -13.94 + 0.59)
Location | 7,864,735 – 7,864,825 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.30 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -20.48 |
Energy contribution | -21.87 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.15 |
Mean z-score | -1.76 |
Structure conservation index | 0.70 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7864735 90 + 27905053 ACCCAAGGCCG-----------CGGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAGGCUUCCGGUUGGGCGGGCGGAU ..((.(((((.-----------(((.....((.(((((((((..............))))))))).)).....)))..)))))(((......)))..)).. ( -30.04) >DroPse_CAF1 27286 98 + 1 AUCGAAAACCCCUCUGUACAGCCAACAAACUGUCGAUGGGAAUAAAAUAAACCAAUUUCCCAUCGUCGCAUUGCCGAAGGCUUCCGGUGGAGA---GCGAC ...............(.((((........)))))((((((((..............))))))))(((((.(..(((........)))..)...---))))) ( -26.74) >DroSim_CAF1 25883 90 + 1 AUCCAAGGCCG-----------CGGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAGGCUUCCGGUUGGGCGGGCGGAU ((((.(((((.-----------(((.....((.(((((((((..............))))))))).)).....)))..)))))(((......)))..)))) ( -31.64) >DroEre_CAF1 25751 90 + 1 ACCCGAGGCCG-----------CAGAAAACCGUCGGUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAGGCUUCCGGUUGGGCGGACGGAU ..(((...(((-----------(....(((((.(((((((((..............))))))))).).....(((...)))....))))..)))).))).. ( -31.04) >DroYak_CAF1 26100 90 + 1 ACGCAAGGCCG-----------CAGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAGGCUUCCGGUUGGGCGGGCGGAU .(....).(((-----------(..........(((((((((..............)))))))))((((...((((........))))...)))))))).. ( -30.44) >DroPer_CAF1 27249 98 + 1 AUCGAAAACCCCUCUGUACAGCCAACAAACUGUCGAUGGGAAUAAAAUAAACCAAUUUCCCAUCGUCGCAUUGCCGAAGGCUUCCGGUGGAGA---CCGAC .(((....(.((.(((...((((..........(((((((((..............)))))))))(((......))).))))..))).)).).---.))). ( -25.44) >consensus ACCCAAGGCCG___________CAGAAAACCGUCGAUGGGAAUAAAAUAAACCAAUUUCCUAUCGUCGCAUUGCCGAAGGCUUCCGGUUGGGCGGGCGGAU .............................(((((((((((((..............))))))))..(((...((((........))))...)))))))).. (-20.48 = -21.87 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:11 2006