Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,863,369 – 7,863,463 |
Length | 94 |
Max. P | 0.828375 |
Location | 7,863,369 – 7,863,463 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 71.74 |
Mean single sequence MFE | -29.03 |
Consensus MFE | -12.52 |
Energy contribution | -12.13 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.16 |
Mean z-score | -1.94 |
Structure conservation index | 0.43 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7863369 94 - 27905053 ---UGUGAGUGUG-UGUGGAUGGAUGUACGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGCAUA ---.(((((..((-(((.((((......))))((((((((((((........)))))))))..((.((....))))..)-)))))))..))----------------)))..... ( -26.00) >DroPse_CAF1 26175 101 - 1 ---GGUAAAUGUU-----------UGUGCGGGAGGGAGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUGGAGCAUCGCCACACAUGUUGGCCAAUUUAUGUGCUUAUGUACA ---(((..((((.-----------((.(((((((((.(((((((........)))))))...).)))).(.....).)))))).))))....)))......(((((....))))) ( -27.90) >DroEre_CAF1 24351 92 - 1 ---UGCGAGUGU-G--UGGAUGGAUGUGUGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGCAUA ---........(-(--((.(((((((((((((.(((((((((((........)))))))))..((.((....)))).))-.))))))))))----------------))).)))) ( -31.20) >DroYak_CAF1 24725 97 - 1 UUGUGCGUGUGU-GAAUGGAUGGAUGUGUGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGCAUA ............-..(((.(((((((((((((.(((((((((((........)))))))))..((.((....)))).))-.))))))))))----------------))).))). ( -30.70) >DroAna_CAF1 26078 85 - 1 ---UGCCAGUGG-GCACGGGAGG---------CGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGUAUA ---((((....)-)))...((((---------((.(((((((((........))))))))).)))))).((((......-))))((((...----------------.))))... ( -30.50) >DroPer_CAF1 26139 101 - 1 ---GGUAAAUGUU-----------UGUGCGGGAGGGAGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUGGAGCAUCGCCACACAUGUUGGCCAAUUUAUGUGCUUAUGUACA ---(((..((((.-----------((.(((((((((.(((((((........)))))))...).)))).(.....).)))))).))))....)))......(((((....))))) ( -27.90) >consensus ___UGCGAGUGU____UGGAUGG_UGUGCGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC_CAACACAUGUU________________UAUGCAUA ........((((.....................(((((((((((........)))))))))...))...((((.......))))))))........................... (-12.52 = -12.13 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:05 2006