Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,860,542 – 7,860,645 |
Length | 103 |
Max. P | 0.500000 |
Location | 7,860,542 – 7,860,645 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 83.82 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -22.66 |
Energy contribution | -22.33 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.17 |
Mean z-score | -1.56 |
Structure conservation index | 0.77 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7860542 103 - 27905053 UGUCUUUGUCCAAUCUAGGGCAUCAUUUGUUUUGCAGAUUUCUUCCGGCUCAUUUUUGGCUGGCACUUCAAUAGUCGUUGGUCUUUCGGAUUGGCCAGAUGAC .(((((((.(((((((.((((...(((((.....)))))........))))......(((..(((((.....))).))..)))....))))))).)))).))) ( -29.20) >DroEre_CAF1 21630 103 - 1 GCUCUUUGUCCAAUCCAGAGCCUCCUGUGUUUUGCACAUUUCCUCCGGCUCAUUCUUGGAUGGCUCUAUAAAAUUGAUUGGGUUUUCGGAUUGGCCAGAUGAC ..((((((.((((((((((((((((((((.....))))...((...)).........))).))))))........((........))))))))).)))).)). ( -30.20) >DroYak_CAF1 21883 103 - 1 GUUCUUUGUCCAAUCCAUGGCCUCCUGUGUUUUGCAGAUUUGCUCCGGCUCAUUCUUGGCUGGCUCUUGAAAAGUGAUUGGGUUCUCGGAUUGGCCAGCUGAC (((..(((.((((((((..((((.((((.....))))..(..(((((((.((....))))))).........))..)..))))..).))))))).)))..))) ( -28.90) >consensus GCUCUUUGUCCAAUCCAGGGCCUCCUGUGUUUUGCAGAUUUCCUCCGGCUCAUUCUUGGCUGGCUCUUCAAAAGUGAUUGGGUUUUCGGAUUGGCCAGAUGAC ..((((((.(((((((..((.(((.((((.....))))......(((((.((....)))))))................))).))..))))))).)))).)). (-22.66 = -22.33 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:04 2006