Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,860,364 – 7,860,462 |
Length | 98 |
Max. P | 0.914595 |
Location | 7,860,364 – 7,860,462 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 74.01 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -16.28 |
Energy contribution | -17.06 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.29 |
Mean z-score | -2.08 |
Structure conservation index | 0.48 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7860364 98 + 27905053 CAGAUACCAAGGAUGUGAUUCGUGCCCAGGCCAUUCGCACCUUAAAGGAGCAAAGUUGCCCCUC-------------AAGCGAGGAUAACUACAACGGACGGAUCAAUCCC ..........((((.((((((((.((..(((..((.((.((.....)).)).))...)))((((-------------....))))...........)))))))))))))). ( -29.40) >DroSec_CAF1 21237 98 + 1 CAGAUCCCAAGGAUGUGAUACGUGCCCAGGCCAUCCGCUCUUUAAAGGAGCAAAGUUGCCCCUC-------------AAGCGAGGAUAACUACAACGGACGUAUCAAUCCC ..........((((.((((((((((....))...(((((((.....)))))..(((((..((((-------------....)))).))))).....)))))))))))))). ( -32.90) >DroSim_CAF1 21544 98 + 1 CAGAUCCCAAGGAUGUGAUGCGUGCCCAGGCCAUCCGCUCCUUAAAGGAUCAAAGUUGCCCCUC-------------AAGCGAGGAUAACUACAACGGACGUAUCAAUCCC ..........((((.((((((((((....))...(((.(((.....)))....(((((..((((-------------....)))).)))))....))))))))))))))). ( -29.20) >DroEre_CAF1 21452 98 + 1 CAGUUCCCAGGGAUGUGAUGCGCGCCCAGGCCAUCCGCUCCUUGAAGGAGCAAAGUUGUCCCUC-------------GAGCGAGGAUGACUACAACGGACGGAUCAAUCCC .........(((((.((((.((.((....))..((((((((.....)))))..(((..(((.((-------------....)))))..))).....))))).))))))))) ( -37.30) >DroYak_CAF1 21705 98 + 1 CAGUUCCCAGGGAUGUGAUGCGUGCGCAGGCCAUCCGCUCCCUAAAGGAGCAGAGCUGCCCCUC-------------CAGCGAGGAUGGCUACAACGGACGGAUCAAUCCC .........(((((.((((.(((.((..(((((((((((((.....)))))...((((......-------------))))..))))))))....)).))).))))))))) ( -46.70) >DroPer_CAF1 23189 104 + 1 CAGAAAGUGAAAAGGUUAUCGGAAGGCAGGUCCUCCGAUCGCUAAG-------AGCUACUCCCGAAGAUAUGUCCGGCAGCGGGGAGAGCAUGAAAGGGAGCUUCAAUUAU ..((((((.....(((.((((((.((.....)))))))).)))...-------.))).(((((.....((((((((....))).....)))))...))))).)))...... ( -26.70) >consensus CAGAUCCCAAGGAUGUGAUGCGUGCCCAGGCCAUCCGCUCCUUAAAGGAGCAAAGUUGCCCCUC_____________AAGCGAGGAUAACUACAACGGACGGAUCAAUCCC ..........((((.((((.((.((....))..((((((((.....)))))..((((...((((.................))))..)))).....))))).)))))))). (-16.28 = -17.06 + 0.78)
Location | 7,860,364 – 7,860,462 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 74.01 |
Mean single sequence MFE | -35.93 |
Consensus MFE | -20.26 |
Energy contribution | -21.13 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.34 |
Mean z-score | -1.71 |
Structure conservation index | 0.56 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7860364 98 - 27905053 GGGAUUGAUCCGUCCGUUGUAGUUAUCCUCGCUU-------------GAGGGGCAACUUUGCUCCUUUAAGGUGCGAAUGGCCUGGGCACGAAUCACAUCCUUGGUAUCUG (((((((((.(((((...........((((....-------------))))(((...(((((.((.....)).)))))..)))..)).))).)))).)))))......... ( -31.10) >DroSec_CAF1 21237 98 - 1 GGGAUUGAUACGUCCGUUGUAGUUAUCCUCGCUU-------------GAGGGGCAACUUUGCUCCUUUAAAGAGCGGAUGGCCUGGGCACGUAUCACAUCCUUGGGAUCUG (((((((((((((((......(((((((..((((-------------((((((((....))))))))....)))))))))))...)).)))))))).)))))......... ( -38.00) >DroSim_CAF1 21544 98 - 1 GGGAUUGAUACGUCCGUUGUAGUUAUCCUCGCUU-------------GAGGGGCAACUUUGAUCCUUUAAGGAGCGGAUGGCCUGGGCACGCAUCACAUCCUUGGGAUCUG .((((......))))(((((.....(((((....-------------))))))))))...((((((..(((((...((((((....))...))))...))))))))))).. ( -32.50) >DroEre_CAF1 21452 98 - 1 GGGAUUGAUCCGUCCGUUGUAGUCAUCCUCGCUC-------------GAGGGACAACUUUGCUCCUUCAAGGAGCGGAUGGCCUGGGCGCGCAUCACAUCCCUGGGAACUG ((((((((((((((((.....(((((((..((((-------------((((((((....)).))))))...))))))))))).)))))).).)))).)))))......... ( -39.30) >DroYak_CAF1 21705 98 - 1 GGGAUUGAUCCGUCCGUUGUAGCCAUCCUCGCUG-------------GAGGGGCAGCUCUGCUCCUUUAGGGAGCGGAUGGCCUGCGCACGCAUCACAUCCCUGGGAACUG (((((((((.(((.(((....(((((((((.(((-------------((((((((....))))))))))).))..)))))))..))).))).)))).)))))......... ( -49.70) >DroPer_CAF1 23189 104 - 1 AUAAUUGAAGCUCCCUUUCAUGCUCUCCCCGCUGCCGGACAUAUCUUCGGGAGUAGCU-------CUUAGCGAUCGGAGGACCUGCCUUCCGAUAACCUUUUCACUUUCUG .....(((((..........((((....(..((.(((((......))))).))..)..-------...))))((((((((......)))))))).....)))))....... ( -25.00) >consensus GGGAUUGAUCCGUCCGUUGUAGUUAUCCUCGCUU_____________GAGGGGCAACUUUGCUCCUUUAAGGAGCGGAUGGCCUGGGCACGCAUCACAUCCUUGGGAUCUG (((((((((.((((((((((.....(((((.................))))))))))...((((((...)))))))))))((....))....)))).)))))......... (-20.26 = -21.13 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:03 2006