Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,853,295 – 7,853,399 |
Length | 104 |
Max. P | 0.812353 |
Location | 7,853,295 – 7,853,399 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.75 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -12.96 |
Energy contribution | -13.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -2.31 |
Structure conservation index | 0.66 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7853295 104 + 27905053 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAACUCCAAAC--------ACCAA .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).)).....................--------..... ( -19.10) >DroSec_CAF1 14252 112 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAGCUCCAAACCCCAAAACAGCAA .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).))....(((.....)))................... ( -20.60) >DroSim_CAF1 14452 112 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAGCUCCAAACCCCAAAACAGCAA .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).))....(((.....)))................... ( -20.60) >DroEre_CAF1 14342 97 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCGCCAAACUUCC---------------A .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).))..................---------------. ( -19.10) >DroYak_CAF1 14544 97 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUCUUUUUAUGGCCAAUCCCAUGCACUCCGACACUCACUCACUCAGCUCGAAACUUCC---------------A (((.((((----((((((...((((((((......)))))))).......((((......))))))))...((.......)))))))).)))........---------------. ( -22.40) >DroPer_CAF1 15707 92 + 1 CGAUUUGAAAGUGUGUGCAUUCGAUUGAAAUUAAAUGCAAUUGUUUUUUUAUGGCCAAUUCCGUGCUCUCUGACCCUUCGUCA----------GACUUCAU--------------A .....((((((..((.(((((..((....))..)))))(((((..(......)..))))).))..)).((((((.....))))----------)).)))).--------------. ( -16.60) >consensus CGAUUUGA____GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAACUCCAA______________A ............(.((((...((((((((......)))))))).......((((......)))))))).).............................................. (-12.96 = -13.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:58 2006