Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,847,646 – 7,847,740 |
Length | 94 |
Max. P | 0.636478 |
Location | 7,847,646 – 7,847,740 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.13 |
Mean single sequence MFE | -19.72 |
Consensus MFE | -13.99 |
Energy contribution | -15.12 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.15 |
Mean z-score | -1.90 |
Structure conservation index | 0.71 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7847646 94 - 27905053 AAAAGGAAAAAAUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG ..............((((((((.(....)...))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -22.80) >DroSec_CAF1 10840 94 - 1 AAAAGAAAAAAUUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG ..............((((((((.(....)...))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -22.80) >DroSim_CAF1 10909 94 - 1 AAAAGAAAAAAAUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG ..............((((((((.(....)...))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -22.80) >DroEre_CAF1 10813 87 - 1 -------AAAAAUACUUUCGCGGCCACAAGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG -------.......((((((((..(....)..))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -21.10) >DroYak_CAF1 11003 89 - 1 -----AAAAAAAUACUUUCGCGGCCACGGGAGCAUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG -----.............(((((((...((..(......)..))...................(((..((((....))))..)))..))))))) ( -19.90) >DroAna_CAF1 11790 71 - 1 --------AA---CUUUUCGCGGCU--GGGACCACGAAAGAGCUAAGAAAAUUCAAACAAAAAUGCAAC-AACUUUC---------AUUUUAUC --------..---.(((((..((((--(....).(....)))))..)))))........((((((.((.-...)).)---------)))))... ( -8.90) >consensus _____AAAAAAAUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG ..............((((((((..(....)..))))))))................((((...(((..((((....))))..)))....)))). (-13.99 = -15.12 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:56 2006