Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,846,418 – 7,846,532 |
Length | 114 |
Max. P | 0.880843 |
Location | 7,846,418 – 7,846,532 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.84 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -17.26 |
Energy contribution | -18.57 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.24 |
Structure conservation index | 0.66 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7846418 114 + 27905053 ---UAUUUACAUCUUGAGUUAGGAACGCAUGGAUGUGUGAUGAAAACAAGUUAUGCGUAUAUGAAUUGAGUGUUCUCAUUGAAAGUCGCAAGUUCAGCAGUAUGAUGAAGAUGUAAG- ---...(((((((((..((((...((((((((...(((.......)))..))))))))...((((((..((((((.....)))...))).))))))......)))).))))))))).- ( -28.50) >DroSec_CAF1 9534 112 + 1 ---UAUUUACAUCUUGAAUUAGGAACGCAUGGAUGUGUGAUGAAAACAAGUUAUGCGUAUAUGAAUUGAGUGUUCUCAUUGAAAGUCGUAAGUUAA---GUAUGCUGAAAAUGUAAGA ---..((((((((((((.(((.((((((((((...(((.......)))..))))))))........((((....)))).......)).))).))))---).))).))))......... ( -23.40) >DroSim_CAF1 9620 112 + 1 ---UAUUUACAUCUUGAAUUAGGAACGCAUGGAUGUGUGAUGAAAACAAGUUAUGCGUAUAUGAAUUGAGUGUUCUCAUUGAAAGUCUUAAGUUAA---GUAUGAUGAAGAUGUAAGA ---..((((((((((..((((...((((((((...(((.......)))..))))))))...(((.(((((..(((.....)))...))))).))).---...)))).)))))))))). ( -27.80) >DroYak_CAF1 9747 115 + 1 ACAUAUUUGCAUCUUGAAUUCGGAACGCAAGGAUGUGUGAUGAAAACAAGUUAUGCAUAUAAGAAUUAAGAGUUCUAAUUGAAAGUCGAAACGUAA---GUAUGUUGAAAAUCUAAGA ((((((((((.((((((.(((....(....).(((((((((........)))))))))....))))))))).(((.....))).........))))---))))))............. ( -24.20) >consensus ___UAUUUACAUCUUGAAUUAGGAACGCAUGGAUGUGUGAUGAAAACAAGUUAUGCGUAUAUGAAUUGAGUGUUCUCAUUGAAAGUCGUAAGUUAA___GUAUGAUGAAAAUGUAAGA .....((((((((((.(.......((((((((...(((.......)))..))))))))........((((....))))...........................).)))))))))). (-17.26 = -18.57 + 1.31)
Location | 7,846,418 – 7,846,532 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.84 |
Mean single sequence MFE | -16.05 |
Consensus MFE | -12.09 |
Energy contribution | -12.65 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.26 |
Structure conservation index | 0.75 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7846418 114 - 27905053 -CUUACAUCUUCAUCAUACUGCUGAACUUGCGACUUUCAAUGAGAACACUCAAUUCAUAUACGCAUAACUUGUUUUCAUCACACAUCCAUGCGUUCCUAACUCAAGAUGUAAAUA--- -.(((((((((.........((.......))((.......((((....))))........((((((....(((.........)))...)))))).......)))))))))))...--- ( -18.10) >DroSec_CAF1 9534 112 - 1 UCUUACAUUUUCAGCAUAC---UUAACUUACGACUUUCAAUGAGAACACUCAAUUCAUAUACGCAUAACUUGUUUUCAUCACACAUCCAUGCGUUCCUAAUUCAAGAUGUAAAUA--- ..(((((((((........---..................((((....))))........((((((....(((.........)))...)))))).........)))))))))...--- ( -14.40) >DroSim_CAF1 9620 112 - 1 UCUUACAUCUUCAUCAUAC---UUAACUUAAGACUUUCAAUGAGAACACUCAAUUCAUAUACGCAUAACUUGUUUUCAUCACACAUCCAUGCGUUCCUAAUUCAAGAUGUAAAUA--- ..(((((((((........---..................((((....))))........((((((....(((.........)))...)))))).........)))))))))...--- ( -17.00) >DroYak_CAF1 9747 115 - 1 UCUUAGAUUUUCAACAUAC---UUACGUUUCGACUUUCAAUUAGAACUCUUAAUUCUUAUAUGCAUAACUUGUUUUCAUCACACAUCCUUGCGUUCCGAAUUCAAGAUGCAAAUAUGU .............(((((.---....((((..(.......)..))))..............(((((..((((..(((...((.((....)).))...)))..)))))))))..))))) ( -14.70) >consensus UCUUACAUCUUCAUCAUAC___UUAACUUACGACUUUCAAUGAGAACACUCAAUUCAUAUACGCAUAACUUGUUUUCAUCACACAUCCAUGCGUUCCUAAUUCAAGAUGUAAAUA___ ..(((((((((.............................((((....))))........((((((....(((.........)))...)))))).........)))))))))...... (-12.09 = -12.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:55 2006