Locus 2923

Sequence ID 3R_DroMel_CAF1
Location 7,844,894 – 7,845,002
Length 108
Max. P 0.535158
window4705

overview

Window 5

Location 7,844,894 – 7,845,002
Length 108
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 73.44
Mean single sequence MFE -18.69
Consensus MFE -1.53
Energy contribution -3.17
Covariance contribution 1.64
Combinations/Pair 1.15
Mean z-score -1.36
Structure conservation index 0.08
SVM decision value 0.00
SVM RNA-class probability 0.535158
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7844894 108 - 27905053
CCACCGAAGAAAAUAACAAGAGGAUACCU----UUAAAGGUGCAUCGAUUUUAAGUCAAAUUUCGGACCGCAUGUUAUCAGAUAAACAAGCGGGUGAUAGGAAUAAGAAAAA
((.((((((..........((.(.(((((----....)))))).))(((.....)))...)))))).((((.((((........)))).))))......))........... ( -24.80)
>DroSec_CAF1 8029 108 - 1
CCACCGAAGAAAAUAACAAGAGGAUACCU----UUAAAGGUGCAUCGCUUUAAAGUCAAAUUUCGGACCGUAUGUUAUCAGAUAAACAAGCGGUUGAUAGGAAUAAGUAAAA
((.((((((.........(((((((((((----....))))..))).)))).........))))))(((((.((((........)))).))))).....))........... ( -22.67)
>DroSim_CAF1 8115 100 - 1
CCACCGAAGAAAAUAACAAGAGGAUACCU----UUAAAGGUGCAUCGAUUUUAAGUCAAAUUUCGGACCG--------CAGAUAAACAAGCGGUUGAUAGGAAUAAGAAAAU
((.((((((..........((.(.(((((----....)))))).))(((.....)))...))))))((((--------(..........))))).....))........... ( -21.20)
>DroEre_CAF1 8058 107 - 1
CCACUGAAGAAAAUAGGAAAAAGAUAGCUUGCUUGAAAGACGCAUCCGAUUUA-----AAUAAUGGACCUAAUGUAACCAGAUAAACAAGCACAUAAUACAAAUUAGCAAAA
...(((.......((((............(((((....)).)))(((.(((..-----...)))))))))).......)))............................... ( -10.04)
>DroYak_CAF1 8075 100 - 1
UCACUGAAGAAAAUAGCAAGACAACACCUUGCUUUAAAGGUACAUCAGAUUU------------GGACCUCAUGUCACCAGAUAAACAAACCAAUAAUACGAAUUAGAAAGG
...((((.......((((((.......)))))).....(((.......((((------------((...........))))))......)))...........))))..... ( -14.72)
>consensus
CCACCGAAGAAAAUAACAAGAGGAUACCU____UUAAAGGUGCAUCGAUUUUAAGUCAAAUUUCGGACCGCAUGUUACCAGAUAAACAAGCGGAUGAUAGGAAUAAGAAAAA
...((((((.............(((((((........))))..)))..............)))))).............................................. ( -1.53 =  -3.17 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:51 2006