Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,836,773 – 7,836,872 |
Length | 99 |
Max. P | 0.762342 |
Location | 7,836,773 – 7,836,872 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 86.49 |
Mean single sequence MFE | -20.15 |
Consensus MFE | -16.76 |
Energy contribution | -16.23 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.20 |
Mean z-score | -2.03 |
Structure conservation index | 0.83 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7836773 99 - 27905053 AUUCCCUGAAACUC-----UCCAUCAAACUUACCAUCUUUUGCCUGUUUCGCCUUUUUAGCGAUGUUGAGCAGGCCUUUGUAUUUGCUGAUGAUUUCAUCUUUG ......(((((.((-----..((.((((..(((........(((((((((((.......)))).....)))))))....))))))).))..)))))))...... ( -18.10) >DroSec_CAF1 33 99 - 1 AUUCCCUUAAGCUC-----UCCAUCAAACAUACCAUCUUUCGCCUGUUUCGCCUUUUUGGCGAUGUUGAGCAGGCCUUUAUAUUUGCUGAUGAUUUCAUCUUUG ....(((...((((-----..(((((((((..(........)..))))).(((.....)))))))..)))))))..............((((....)))).... ( -21.30) >DroSim_CAF1 33 99 - 1 AUUCCCUUAAGCUC-----UCCAUCAAACUUACCAUCUUUCGCCUGUUUCGCCUUUUUGGCGAUGUUGAGCAGGCCUUUAUACUUGCUGAUGAUUUCAUCUUUG ..............-----......................((((((((((((.....))))).....))))))).............((((....)))).... ( -21.30) >DroEre_CAF1 38 99 - 1 AUUCCCUGCAACGU-----UCCAUCUAACUUACCAUCUUUCGCCUGCUUGGCUUUUUUUGCAAUGUUGAGCAGGCCCUUGUAUUUGCUGAUGAUUUCAUCUUUG .......((((.((-----(......)))............(((((((..((............))..)))))))........)))).((((....)))).... ( -23.90) >DroYak_CAF1 33 99 - 1 AUUCCCUGAAGCUU-----UCCAUCUAACUUACCAUCUUUCGCCUGUUUGGCUUUCUUUGCAAUGUUGAGCAGGCCUUUAUAUUUGCUGAUGAUUUCAUCUUUG ..............-----......................(((((((..((............))..))))))).............((((....)))).... ( -19.10) >DroAna_CAF1 33 104 - 1 AGUUCCAGAAACUUCUUCCUACCACCACCUUACCAUCUUUCGCCUGUUUUGCUUUUUUGGCAAUGUUUAACAGGCCCUUGUAUUUGUUGAUGAUUUCAUCUUUG .....((((................................((((((((((((.....))))).....))))))).............((((....)))))))) ( -17.20) >consensus AUUCCCUGAAACUC_____UCCAUCAAACUUACCAUCUUUCGCCUGUUUCGCCUUUUUGGCAAUGUUGAGCAGGCCUUUAUAUUUGCUGAUGAUUUCAUCUUUG .........................................(((((((..((.((......)).))..))))))).............((((....)))).... (-16.76 = -16.23 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:48 2006