Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,831,489 – 7,831,591 |
Length | 102 |
Max. P | 0.947580 |
Location | 7,831,489 – 7,831,591 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.64 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -17.60 |
Energy contribution | -18.27 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.47 |
Structure conservation index | 0.79 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7831489 102 + 27905053 CGCCGGAGCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAA----AAGUAGGCAAAAUGCGAAAAAGGCAUAG-GCACAAAAGGAGC .(((...((.........((((((.....))))))((((((((.......))))))))...----......))...((((.......)))).)-))........... ( -26.50) >DroPse_CAF1 23017 95 + 1 CGCCA-CGCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAA----AAAGAA-CAAA----G-AAAAACCAAAUAGCAAAAAGUAAA- .....-.((.........((((((.....))))))((((((((.......))))))))...----......-....----.-............))..........- ( -18.00) >DroSec_CAF1 20325 101 + 1 CGCCGGAGCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAA----AAGUAGGCAAAAUGGGAAAAAGGCAUA--GCACAAAAGGAGC .(((...((.........((((((.....))))))((((((((.......))))))))...----..)).)))...................--............. ( -21.50) >DroSim_CAF1 22214 101 + 1 CGCCGGAGCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAA----AAGUAGGCGAAAUGCGAAAAAGGCAAA--ACACAAAAGGAGC ((((...((.........((((((.....))))))((((((((.......))))))))...----..)).))))...(((.......)))..--............. ( -24.80) >DroAna_CAF1 22090 105 + 1 CGCCGG-GCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAAAAAAAAGGAGGUAAAAUGCGAAA-AGGCAAAAAACUGAAAAUGGGC ..(((.-.((((...))))..)))...((((.(((((((((((.......))))))))))).....))))(((....(((....-..)))....))).......... ( -24.60) >DroPer_CAF1 22913 95 + 1 CGCCA-CGCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAA----AAAGAA-CAAA----G-AAAAACCAAAUAGCAAAAAGUAAA- .....-.((.........((((((.....))))))((((((((.......))))))))...----......-....----.-............))..........- ( -18.00) >consensus CGCCGGAGCAAUUGAAUUGAACGGAAAUUCUGUUUGCAUAUGUGAAUAAAACAUAUGCAAA____AAGGAGGCAAAAUGCGAAAAAGGCAAA__GCACAAAAGGAGC .(((..............((((((.....))))))((((((((.......))))))))............................))).................. (-17.60 = -18.27 + 0.67)
Location | 7,831,489 – 7,831,591 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 83.64 |
Mean single sequence MFE | -19.77 |
Consensus MFE | -15.22 |
Energy contribution | -15.33 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.92 |
Structure conservation index | 0.77 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7831489 102 - 27905053 GCUCCUUUUGUGC-CUAUGCCUUUUUCGCAUUUUGCCUACUU----UUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGCUCCGGCG ...........((-(...((.......((.....))...((.----(((((((((((.......))))))))))).))....................))...))). ( -20.80) >DroPse_CAF1 23017 95 - 1 -UUUACUUUUUGCUAUUUGGUUUUU-C----UUUG-UUCUUU----UUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGCG-UGGCG -..........(((((((((.....-.----...(-((((..----(((((((((((.......))))))))))).)))))...........))))....)-)))). ( -19.75) >DroSec_CAF1 20325 101 - 1 GCUCCUUUUGUGC--UAUGCCUUUUUCCCAUUUUGCCUACUU----UUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGCUCCGGCG ((.........))--...................(((.....----(((((((((((.......)))))))))))..(((((.......))))).........))). ( -18.50) >DroSim_CAF1 22214 101 - 1 GCUCCUUUUGUGU--UUUGCCUUUUUCGCAUUUCGCCUACUU----UUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGCUCCGGCG ........((((.--...........))))...((((.....----(((((((((((.......)))))))))))..(((((.......))))).........)))) ( -20.20) >DroAna_CAF1 22090 105 - 1 GCCCAUUUUCAGUUUUUUGCCU-UUUCGCAUUUUACCUCCUUUUUUUUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGC-CCGGCG (((........((....(((..-....)))....)).....((((.(((((((((((.......))))))))))).))))....................-..))). ( -19.60) >DroPer_CAF1 22913 95 - 1 -UUUACUUUUUGCUAUUUGGUUUUU-C----UUUG-UUCUUU----UUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGCG-UGGCG -..........(((((((((.....-.----...(-((((..----(((((((((((.......))))))))))).)))))...........))))....)-)))). ( -19.75) >consensus GCUCAUUUUGUGC__UUUGCCUUUUUCGCAUUUUGCCUACUU____UUUGCAUAUGUUUUAUUCACAUAUGCAAACAGAAUUUCCGUUCAAUUCAAUUGCUCCGGCG ..................(((.........................(((((((((((.......)))))))))))..(((((.......))))).........))). (-15.22 = -15.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:47 2006