Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,123,812 – 1,123,903 |
Length | 91 |
Max. P | 0.983444 |
Location | 1,123,812 – 1,123,903 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.80 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -21.94 |
Energy contribution | -22.58 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.41 |
Structure conservation index | 0.81 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1123812 91 + 27905053 AAGCUCGUGAAAAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU ..(((((((.(((((..........(((((((((..(((....)))....)))))))))...........))))).))).))))....... ( -27.20) >DroSec_CAF1 57460 90 + 1 AAGCGCGUGC-AAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU ..((((((((-(((((.....))..(((((((((..(((....)))....)))))))))....)))))))...(((....)))..)))).. ( -32.10) >DroSim_CAF1 58002 90 + 1 AAGCGCGUGC-AAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU ..((((((((-(((((.....))..(((((((((..(((....)))....)))))))))....)))))))...(((....)))..)))).. ( -32.10) >DroEre_CAF1 58174 89 + 1 -AGCUCGCGC-AACAAAAAACUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGACGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU -.....((((-..............(((.(((((..(((....)))....))))).)))......(((.((........)).))))))).. ( -24.30) >DroYak_CAF1 78544 89 + 1 -AACUCGUGC-AACAAAAAACUCAAGCAGCGAUGAUGGCAAACGCUUCACUAUCGACGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU -.....((((-..............((..(((((..(((....)))....)))))..))......(((.((........)).))))))).. ( -19.90) >consensus AAGCUCGUGC_AAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU ......((((...............(((((((((..(((....)))....)))))))))......(((.((........)).))))))).. (-21.94 = -22.58 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006