Locus 2919

Sequence ID 3R_DroMel_CAF1
Location 7,826,948 – 7,827,048
Length 100
Max. P 0.670430
window4699

overview

Window 9

Location 7,826,948 – 7,827,048
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.97
Mean single sequence MFE -35.15
Consensus MFE -23.83
Energy contribution -24.78
Covariance contribution 0.95
Combinations/Pair 1.38
Mean z-score -1.79
Structure conservation index 0.68
SVM decision value 0.29
SVM RNA-class probability 0.670430
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7826948 100 + 27905053
GGUCCUGGUGGCCCUACU----ACCGCUGCUAGGAGCUGUUUCAGCGAAUCGCACUUUUGUGGUGGACUACGAAAAGGAUCAGUUCCUAAAGGAUGGAGAACCA
.((((((((((.....))----))).....(((((((((.(((.(((...)))..((((((((....)))))))).))).))))))))).)))))((....)). ( -36.40)
>DroVir_CAF1 101821 100 + 1
GAUCAUAUUGGCUUUGGUUUCAAUUACUGCAAUCGGCAGC----AGCAGUCGCACCUUCGUUGUGGACUAUGAGAAUGAUCGGUUUCUGAAGGAUGGACUGCCA
..........(((((((((.((.....)).)))))).)))----.((((((.((((((((....(((((..((......))))))).)))))).)))))))).. ( -25.80)
>DroSec_CAF1 15822 100 + 1
GGUCCUGGUGGCUCUACU----ACCGCUGCUAGGAGCUGUUUCAGCGAAUCGCACUUUCGUGGUGGACUACGAAAAGGAUCAGUUCCUAAAGGAUGGCGAACCA
.((((((((((.....))----))).....(((((((((.(((.(((...)))..((((((((....)))))))).))).))))))))).)))))((....)). ( -38.50)
>DroSim_CAF1 17743 100 + 1
GGUCCUGGUGGCUCUACU----ACCGCUGCUAGGAGCUGUUUCAGCGAAUCGCACUUUCGUAGUGGACUACGAGAAGGAUCAGUUUCUAAAGGAUGGCGAACCA
.((((((((((.....))----))).....(((((((((.(((.(((...)))..((((((((....)))))))).))).))))))))).)))))((....)). ( -36.00)
>DroEre_CAF1 17920 100 + 1
GGUCCUGGUGGGUCUACU----GCCGCUGCUGGGAGCUGCUUCAGAGAAUCGCACUUUCGCAGUGGACUACGAUAAGGAUCAGUUCUUAAAGGAUGGAGAACCA
((((((..((((((((((----((.((.((.....)).))....((((.......)))))))))))))).))...)))))).((((((........)))))).. ( -35.80)
>DroYak_CAF1 18824 100 + 1
GGUCCUGGUGGGUCUACU----UCCGCUGCUGGGAGCUGUUUCAGCGAAUCGCACUUUCGUAGUGGACUACGAGAACGAUCAGUUCCUAAAGGAUGGAGAACCA
.(((((((((((......----))))))..(((((((((..((.(((...)))..((((((((....))))))))..)).))))))))).)))))((....)). ( -38.40)
>consensus
GGUCCUGGUGGCUCUACU____ACCGCUGCUAGGAGCUGUUUCAGCGAAUCGCACUUUCGUAGUGGACUACGAGAAGGAUCAGUUCCUAAAGGAUGGAGAACCA
.((((((((((............)))))..(((((((((.(((.((.....))..((((((((....)))))))).))).))))))))).)))))((....)). (-23.83 = -24.78 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:45 2006