Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,809,103 – 7,809,212 |
Length | 109 |
Max. P | 0.602951 |
Location | 7,809,103 – 7,809,212 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 87.35 |
Mean single sequence MFE | -38.03 |
Consensus MFE | -29.17 |
Energy contribution | -29.91 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.51 |
Structure conservation index | 0.77 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7809103 109 - 27905053 GAAAAGUAAGUUGGCCAACAACUGGUUACGCCGA-------ACUGUGCAAGUCGGAUUUGGUGUUACCAAUCCUGCUAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA ........(((((.....)))))(((((.(((((-------...((((((((.(((((.((.....))))))).)))..)))))...((.((......)).))))))).))))).. ( -37.70) >DroSim_CAF1 160 116 - 1 GAAAAGUAAGUUGGCCAACAACUGGUUACGCCGAACAGGGAACUGUGCAAGUCUGAUUUGGUGUUACCAAUCCUGCUAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA ..........((((((......((((.(((((((((((...(((.....)))))).)))))))).))))....(((....)))....((((.(((........))))))))))))) ( -38.20) >DroEre_CAF1 160 104 - 1 GAAAAGUAAGUUGGCCAACAACUGGUUGCGCCGAACAGGGAACUGUGCAAGUCGGAUUUGGUG------------CAAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA ..........(((((((.(((....))).(((((((((....)))).((((((((...(((((------------(....))))))....).)).)))))...))))).))))))) ( -37.70) >DroYak_CAF1 154 108 - 1 GAAAAGUAAGUUGGCCAACAACUGGUUGCGCCGAUCGGGGAACUGGGCAAGUCGGAUUUGGUGCUAG--------CAAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA ..........(((((((.(((....))).(((((..((....))((.((((((((...((((((...--------.....))))))....).)).))))).))))))).))))))) ( -38.50) >consensus GAAAAGUAAGUUGGCCAACAACUGGUUACGCCGAACAGGGAACUGUGCAAGUCGGAUUUGGUGUUAC________CAAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA ........(((((.....)))))(((((.(((((((((....)))).(((((((....((((((................))))))......)).)))))...))))).))))).. (-29.17 = -29.91 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:42 2006