Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,805,845 – 7,805,935 |
Length | 90 |
Max. P | 0.587066 |
Location | 7,805,845 – 7,805,935 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -17.48 |
Consensus MFE | -12.18 |
Energy contribution | -11.80 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.14 |
Mean z-score | -1.60 |
Structure conservation index | 0.70 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7805845 90 - 27905053 GUGCGCGAACUACGGGUAAGAGAAAUCUUAACAAAUUCAAUUACUCCCGUACACAGAAAGAAUAUUUUCUUUCUUUGGCAUUUAAUAAU-A----- ((((......(((((((((((....)))))...............))))))((.((((((((....)))))))).))))))........-.----- ( -23.96) >DroSec_CAF1 6905 83 - 1 GUGCGCGAACUACGGGUAAGAGAAAUCUUAACAAAUGCAAUUACUCUCGUACACAGAAAGAAAAUA------UUUCGGCAUUUAA--AAAA----- (((..(((.(....).(((((....)))))................)))..))).((((.......------)))).........--....----- ( -15.00) >DroSim_CAF1 6791 85 - 1 GUGCGCGAACUACGGGUAAGGGAAAUCUUAACAAAUGCAAUUACUCUCGUACACAGAAAGAAAAUA------CUUUGGCAUUUAAUAAAAA----- (((..(((.....((((((..(...............)..)))))))))..)))..((((......------))))...............----- ( -10.96) >DroEre_CAF1 7109 90 - 1 GUGCGCGAACUACGGGUAAGAGAAAUCUUCGCAAAUUCCACUACUCGCGUACACAGAAAGAAAACA------UUUUGGCCUUUAUUUGAAAAUCGA ((((((((.(....)((((((....)))).))............)))))))).(((((........------)))))................... ( -20.00) >consensus GUGCGCGAACUACGGGUAAGAGAAAUCUUAACAAAUGCAAUUACUCUCGUACACAGAAAGAAAAUA______CUUUGGCAUUUAAUAAAAA_____ (((((.((.(....)((((((....)))).))............)).)))))............................................ (-12.18 = -11.80 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:41 2006