Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,795,959 – 7,796,062 |
Length | 103 |
Max. P | 0.705989 |
Location | 7,795,959 – 7,796,062 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.45 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -18.29 |
Energy contribution | -17.98 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.16 |
Mean z-score | -1.47 |
Structure conservation index | 0.62 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7795959 103 + 27905053 AGGCAAGCAUGAA-----UCUC----UAGAUGGC--UUUAUAAUUUGAAAUACCUUCG-UAGGUUCGAUUGCUUCCGCAAGACGUACAAGGCCGAAGGAUACUUUGGCAUGUACC .((.(((((((((-----(((.----..((.((.--((((.....))))...)).)).-.)))))))..))))))).......(((((..(((((((....))))))).))))). ( -31.90) >DroPse_CAF1 6703 112 + 1 ACCUGCU-AUAUAUGAAAUUCCCAUAGAGCUGAUCUACUCCAAUGUUUAAUC-CACGC-UAGGUUCGAUUGCUUCCGCAAGACAUACGCCGCCGAGGGCUACUUUGGCAUGUAUC (((((((-...((((.......)))).))).(((..((......))...)))-.....-.))))....((((....))))...(((((..(((((((....))))))).))))). ( -23.10) >DroSec_CAF1 6352 102 + 1 AGGCGGG-GUGUA-----UCUC----UAGAUGGC--UUUAUAUUGUGAAAUACCCUUC-CAGGUUCGACUGCUUCCGCAAGACGUACAAGGCCGAAGGAUACUUUGGCAUGUACC .((.(((-((((.-----((..----..((((..--....))))..)).))))))).)-)..(((....(((....))).)))(((((..(((((((....))))))).))))). ( -32.60) >DroSim_CAF1 8147 102 + 1 AGGCGGG-GUGUA-----UCUC----UAGAUGGC--UUUAUAAUGUGGAAUACCCUUC-CAGGUUCGACUGCUUCCGCAAGACGUACAAGGCCGAAGGAUACUUUGGCAUGUACC ..(((((-(..((-----((..----..))))((--.....(((.(((((.....)))-)).))).....)))))))).....(((((..(((((((....))))))).))))). ( -33.40) >DroEre_CAF1 6536 105 + 1 AUA-GGG-AUAUA-----UUUCAAUAUAGAUGGC--AUUUCAAAUUGGAAUACCUUUC-UAGGUUCGAUUGCUUCCGCAAGACGUACAAGGCCGAGGGAUACUUUGGCAUGUACC .((-(..-(..((-----(((((((...((....--...))..)))))))))..)..)-)).(((...((((....)))))))(((((..(((((((....))))))).))))). ( -28.70) >DroYak_CAF1 6705 105 + 1 -GA-CGG-AUAUA-----UUUCUAUAUAGAUGUC--AUUUCCAUAUUGAAUACGAUUCAUAGGUUCGAUUGCUUCCGCAAGACGUACAAGGCCGAAGGAUACUUUGGCAUGUACC -((-((.-.((((-----(....)))))..))))--.........((((((.(........)))))))((((....))))...(((((..(((((((....))))))).))))). ( -28.00) >consensus AGGCGGG_AUAUA_____UCUC____UAGAUGGC__AUUACAAUGUGGAAUACCAUUC_UAGGUUCGAUUGCUUCCGCAAGACGUACAAGGCCGAAGGAUACUUUGGCAUGUACC ..............................................................(((...((((....)))))))(((((..(((((((....))))))).))))). (-18.29 = -17.98 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:40 2006