Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,794,384 – 7,794,484 |
Length | 100 |
Max. P | 0.758093 |
Location | 7,794,384 – 7,794,484 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 86.43 |
Mean single sequence MFE | -21.66 |
Consensus MFE | -16.39 |
Energy contribution | -16.27 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.83 |
Structure conservation index | 0.76 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7794384 100 + 27905053 AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUUC-GCCCAUAUGAUAUAAA-----CAC ......((((((((((....................))))))))))......(((.....)))....(((((((.((....-....)).)))))))..-----... ( -22.25) >DroSec_CAF1 4809 100 + 1 AUCUCCGUGGGUUUCGCCGAUCAUGUCAAUAAACUUUGGGUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUUC-GCCCAUAUGAUACACA-----CAC (((...((((((...(((((..(((((((......)))(....)))))..)))))...........((......)).....-))))))..))).....-----... ( -17.70) >DroSim_CAF1 4871 100 + 1 AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUCC-GCCCAUAUGAUACACA-----CAC ......((((((((((....................))))))))))......(((.....)))............(((((.-........)))))...-----... ( -23.65) >DroEre_CAF1 4860 90 + 1 AUCUCCGUGGGGUCCGUCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCCCUGCUUAUCACCCACAUAUAUUAAGUAU---------AUGGUACAC-------AG ......((((((((((....................))))))))))...................(((((((...))))---------)))......-------.. ( -20.65) >DroYak_CAF1 4955 106 + 1 AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCGCUGCUUAUCGCCAACCUAUAUUAAGUAUUCCCCCCAUUUGGCACACAGCACUCAG ......((((((((((....................))))))))))....((((......(((((.......................)))))...))))...... ( -24.05) >consensus AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUUC_GCCCAUAUGAUACACA_____CAC ......((((((((((....................)))))))))).......(((((..............)))))............................. (-16.39 = -16.27 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:39 2006