Locus 2911

Sequence ID 3R_DroMel_CAF1
Location 7,793,878 – 7,793,968
Length 90
Max. P 0.583452
window4691

overview

Window 1

Location 7,793,878 – 7,793,968
Length 90
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 76.35
Mean single sequence MFE -32.93
Consensus MFE -15.90
Energy contribution -17.14
Covariance contribution 1.24
Combinations/Pair 1.06
Mean z-score -1.81
Structure conservation index 0.48
SVM decision value 0.10
SVM RNA-class probability 0.583452
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7793878 90 + 27905053
GUAUCAGUUGUGUGAAUCUCACCUGUCCGCCAGGUGAACCACGCA-----CAC--GGGGAAAAAACGUCGCCGUAAAACGGCAAGCCC-------CCCGCCC-----CC
......((((((((....(((((((.....)))))))..))))))-----.))--((((..........((((.....))))......-------....)))-----). ( -31.65)
>DroSec_CAF1 4304 89 + 1
GUAUCAGUUGUGUGGAUCUCUCCUGUCCGCCAGGUGAACCAUGCG-----CAC--GG-GAAAAAACGUCGCCAUAAAACGGCGAGCCC-------CCCGCCC-----CU
...........((((.....((((((.(((..((....))..)))-----.))--))-)).......(((((.......)))))....-------.))))..-----.. ( -28.10)
>DroSim_CAF1 4366 89 + 1
GUAUCAGUUGUGUGGAUCUCACCUGUCCGCCAGGUGAACCAUGCG-----CAC--GG-GAAAAAACGUCGCCAUAAAACGGCGAGCCC-------CCCGCCC-----CU
......(((((((((...(((((((.....))))))).)))))))-----.))--((-(........(((((.......)))))((..-------...))))-----). ( -30.40)
>DroEre_CAF1 4377 94 + 1
CUAACGAGGAGGUGUAUCUCACCUGGCCGACAGGUGAACCAUGCGGAGCGCAGUGCA-AAGAAAACGUCGACAUCAAACGGCGAGCCU-------CCCUCCC-------
.....((((((((((((.(((((((.....)))))))....((((...)))))))).-.......(((((........))))).))))-------.))))..------- ( -33.30)
>DroYak_CAF1 4433 106 + 1
GUAUCGAGACGGUGUAUCUCACCUGGUCGACAGGUGAACCAUGCGGAGCGCAC--GA-AAGAAAACGUCGCCAUAAAACGGCGAGCCCUCCGCCUCCCGCCCUUCGCCU
....((((..((((....(((((((.....))))))).....((((((.((.(--..-..)......(((((.......))))))).))))))....)))).))))... ( -41.20)
>consensus
GUAUCAGUUGUGUGGAUCUCACCUGUCCGCCAGGUGAACCAUGCG_____CAC__GG_GAAAAAACGUCGCCAUAAAACGGCGAGCCC_______CCCGCCC_____CU
.........(((((....(((((((.....)))))))..))))).......................(((((.......)))))......................... (-15.90 = -17.14 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:38 2006