Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,793,367 – 7,793,459 |
Length | 92 |
Max. P | 0.962862 |
Location | 7,793,367 – 7,793,459 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -34.04 |
Consensus MFE | -20.63 |
Energy contribution | -21.18 |
Covariance contribution | 0.55 |
Combinations/Pair | 1.08 |
Mean z-score | -2.39 |
Structure conservation index | 0.61 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7793367 92 + 27905053 UCAAGGUGC----CGGUGUGACCAG-----------CUUGGCAC---CAGGCGAUAGCCAAUUUGAGCCGUAGAUAUAUUUCAAAGGUGUCGAAACGGUCACUCCGCUGA .......((----.((.((((((..-----------.(((((((---(.(((....)))..((((((..(((....)))))))))))))))))...)))))).))))... ( -35.00) >DroSec_CAF1 3793 95 + 1 UCAAGGUGC----CAGUGUGACCAG-----------CUUGGCACCACCAAGCGAUAGCCAAUUUGAGCCGAAGAUAUAUUUCAAAGGUGUCGAAACGGUCACUCCGCUGA .........----((((((((((.(-----------(((((.....)))))).........((((((((...((......))...))).)))))..))))))...)))). ( -29.60) >DroSim_CAF1 3849 95 + 1 UCAAGGUGC----CAGUGUGACCAG-----------CUUGGCACCACCAGGCGAUAGCCAAUUUGAGCCGAAGAUAUAUUUCAAAGGUGUCGAAACGGUCACUUCGCUGA .........----((((((((((..-----------.((((((((....(((....)))..((((((............))))))))))))))...))))))...)))). ( -31.70) >DroEre_CAF1 3885 95 + 1 ------------UAAGUGUGACCAGCGGACAUGGGGCUUGGCAA---UUGGCGAUAGCCGAUUUGAGCCGAAGAUAUAUUUCAAAGGUGCCGAAACGGUCACUCCGCUGA ------------..........(((((((.....((((..(..(---(((((....)))))))..)))).................((((((...))).)))))))))). ( -34.40) >DroYak_CAF1 3931 107 + 1 GUAAAUUGCUGAUAAGUGUGACCAGCGGACAUUCGGCUUGGCGA---UUGGCGAUAGCCGAUUUGAGCCGAACAUAUAUUUCAAAGGUGCCGAAACGGUCACUCCGCUGA .......(((....))).....(((((((..(((((((..(..(---(((((....)))))))..)))))))..............((((((...))).)))))))))). ( -39.50) >consensus UCAAGGUGC____CAGUGUGACCAG___________CUUGGCAC___CAGGCGAUAGCCAAUUUGAGCCGAAGAUAUAUUUCAAAGGUGUCGAAACGGUCACUCCGCUGA .............((((((((((.((.........))(((((.......(((....))).......(((...((......))...))))))))...))))))...)))). (-20.63 = -21.18 + 0.55)
Location | 7,793,367 – 7,793,459 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -29.31 |
Consensus MFE | -23.62 |
Energy contribution | -23.22 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.81 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7793367 92 - 27905053 UCAGCGGAGUGACCGUUUCGACACCUUUGAAAUAUAUCUACGGCUCAAAUUGGCUAUCGCCUG---GUGCCAAG-----------CUGGUCACACCG----GCACCUUGA ....(((.(((((((((((((.....)))))))........(((.(.....(((....)))..---).)))...-----------..)))))).)))----......... ( -29.10) >DroSec_CAF1 3793 95 - 1 UCAGCGGAGUGACCGUUUCGACACCUUUGAAAUAUAUCUUCGGCUCAAAUUGGCUAUCGCUUGGUGGUGCCAAG-----------CUGGUCACACUG----GCACCUUGA ....(((.(((((((((((((.....)))))))........((((......))))...((((((.....)))))-----------).)))))).)))----......... ( -29.50) >DroSim_CAF1 3849 95 - 1 UCAGCGAAGUGACCGUUUCGACACCUUUGAAAUAUAUCUUCGGCUCAAAUUGGCUAUCGCCUGGUGGUGCCAAG-----------CUGGUCACACUG----GCACCUUGA ...((.(.(((((((((((((.....)))))))........((((((....(((....)))...))).)))...-----------..))))))..).----))....... ( -27.50) >DroEre_CAF1 3885 95 - 1 UCAGCGGAGUGACCGUUUCGGCACCUUUGAAAUAUAUCUUCGGCUCAAAUCGGCUAUCGCCAA---UUGCCAAGCCCCAUGUCCGCUGGUCACACUUA------------ (((((((((((.(((...)))))).................((((..(((.(((....))).)---))....)))).....)))))))).........------------ ( -28.10) >DroYak_CAF1 3931 107 - 1 UCAGCGGAGUGACCGUUUCGGCACCUUUGAAAUAUAUGUUCGGCUCAAAUCGGCUAUCGCCAA---UCGCCAAGCCGAAUGUCCGCUGGUCACACUUAUCAGCAAUUUAC (((((((((((.(((...)))))).............((((((((......(((....)))..---......)))))))).))))))))..................... ( -32.34) >consensus UCAGCGGAGUGACCGUUUCGACACCUUUGAAAUAUAUCUUCGGCUCAAAUUGGCUAUCGCCUG___GUGCCAAG___________CUGGUCACACUG____GCACCUUGA ........(((((((((((((.....)))))))........(((.......(((....))).......)))................))))))................. (-23.62 = -23.22 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:37 2006